Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0018
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    62   2e-10
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    59   1e-09
AF077537-1|AAC26273.2|  111|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
 Frame = +2

Query: 11  PNSIYDVLTHLKNKY-NDPIFYVTENGW----ATSPEVGLEDDDRITYYRAALENILDSL 175
           P+ +  +L ++K KY N P+F +TENG         E    D  RI Y    LE +  +L
Sbjct: 353 PDGLLKILRYVKEKYANTPVF-ITENGCMDIVGQDQEDAFHDQHRIDYISGHLEAVAKAL 411

Query: 176 DAGVRLKGYMAWSLMDNYEWMAGY 247
           D G  + GY  W+LMDN+EW  G+
Sbjct: 412 DEGCNVIGYTVWTLMDNFEWDDGF 435



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +1

Query: 256 FGLYEVDFSDPARPRTPRKSAFVYKEILR 342
           FGL EVDF  P + RT +KSA+ YKE ++
Sbjct: 439 FGLCEVDFESPDKTRTMKKSAYFYKEFIK 467


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
 Frame = +2

Query: 11  PNSIYDVLTHLKNKYNDPIFYVTENGW-------ATSPEVGLEDDDRITYYRAALENILD 169
           P+ ++ +L ++++KYN+   ++TENG            E  L+D  RI +    LE +  
Sbjct: 353 PDGLFGLLKYVRDKYNNIPVFITENGCMDLVGGEGRKEEEILDDKHRIKFISGHLEAVAK 412

Query: 170 SLDAGVRLKGYMAWSLMDNYEWMAGY-TELSVC 265
           +L+ G  + GY  W+LMDN+EW  G+  +  +C
Sbjct: 413 ALEEGCNVIGYTLWTLMDNFEWDDGFGVKFGIC 445



 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 256 FGLYEVDFSDPARPRTPRKSAFVYKEILR 342
           FG+  VDF  P + RT + SA  Y+  +R
Sbjct: 442 FGICRVDFDSPDKTRTMKYSAKYYQTFIR 470


>AF077537-1|AAC26273.2|  111|Caenorhabditis elegans Hypothetical
           protein F16G10.5 protein.
          Length = 111

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 234 GWQDTPNFRFVRG*LFGSRPPSHPAQVRVRLQGDLEEQGHRPRLRAR 374
           GW++    R+VRG      PP  P + R RLQ  ++ +    R+R+R
Sbjct: 28  GWREG---RWVRGAREDREPPPPPRRPRTRLQVRVDREAAEARMRSR 71


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
            T22H6.6a protein.
          Length = 1405

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 314  DLRGVRGRAGSEKSTSYKPKVRCILPSIH-SYPSDSR 207
            ++R  R   GSE   SYKP +  I+ +++  YP +++
Sbjct: 1352 EVRQRRMSTGSEAEPSYKPTIENIISALYDKYPHENK 1388


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
            protein T22H6.6a protein.
          Length = 1405

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 314  DLRGVRGRAGSEKSTSYKPKVRCILPSIH-SYPSDSR 207
            ++R  R   GSE   SYKP +  I+ +++  YP +++
Sbjct: 1352 EVRQRRMSTGSEAEPSYKPTIENIISALYDKYPHENK 1388


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 314 DLRGVRGRAGSEKSTSYKPKVRCILPSIH-SYPSDSR 207
           ++R  R   GSE   SYKP +  I+ +++  YP +++
Sbjct: 587 EVRQRRMSTGSEAEPSYKPTIENIISALYDKYPHENK 623


>Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical
           protein T22H6.6c protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 314 DLRGVRGRAGSEKSTSYKPKVRCILPSIH-SYPSDSR 207
           ++R  R   GSE   SYKP +  I+ +++  YP +++
Sbjct: 238 EVRQRRMSTGSEAEPSYKPTIENIISALYDKYPHENK 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,063
Number of Sequences: 27780
Number of extensions: 217024
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)