Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0004
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.44 
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr...    28   7.1  
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.    28   7.1  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58740-2|AAD32276.1|  191|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 98  SSRASNRSGANTDPSKCSAS---QNLPPDRKRDPLR 196
           SSR+ +RS + +D    S+S   +N PP RKR+P+R
Sbjct: 50  SSRSRSRSSSESDSRSRSSSPVVKNSPPKRKREPIR 85


>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
           protein T02C12.1 protein.
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 165 YHRIVNATH*EHPARKLVGYVYGQNFNKF*RNS 263
           YH  + A    HP  K++   Y Q FNKF ++S
Sbjct: 848 YHDGIQALRQSHPFGKVLFSTYVQKFNKFNKSS 880


>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 165 YHRIVNATH*EHPARKLVGYVYGQNFNKF*RNS 263
           YH  + A    HP  K++   Y Q FNKF ++S
Sbjct: 848 YHDGIQALRQSHPFGKVLFSTYVQKFNKFNKSS 880


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 98  SSRASNRSGANTDPSKCSASQNLPP 172
           SS+A+  SGANT P+  SAS N PP
Sbjct: 594 SSQAAPTSGANTQPATPSAS-NQPP 617


>U58740-2|AAD32276.1|  191|Caenorhabditis elegans Hypothetical
           protein R09H3.3 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 SGANTDPSKCSASQNLPPDRKRDPLRTSGE 208
           S   T P K  AS+ LPP   + P  T+G+
Sbjct: 62  SNLETTPGKTPASEKLPPRAVKTPKNTNGK 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,525,493
Number of Sequences: 27780
Number of extensions: 261848
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)