Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    26   6.3  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    26   6.3  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 122 TSDYANCNFAGLTFITRCYSFTVEVNRE 39
           T+   +C    + F +RCYS T+E N +
Sbjct: 324 TAQQPSCLSGLIQFDSRCYSMTIETNEK 351


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 122 TSDYANCNFAGLTFITRCYSFTVEVNRE 39
           T+   +C    + F +RCYS T+E N +
Sbjct: 324 TAQQPSCLSGLIQFDSRCYSMTIETNEK 351


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 215 PHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSDYAN 105
           P  SN+N +L    N QG     +G+    TT  Y N
Sbjct: 164 PQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,068
Number of Sequences: 27780
Number of extensions: 169265
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)