Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical pr...    40   0.002
X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.    40   0.002
AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeri...    40   0.002
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical
           protein F13D12.7 protein.
          Length = 340

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAV TGSWDSFL+IWN
Sbjct: 324 GMAVCTGSWDSFLKIWN 340


>X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.
          Length = 340

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAV TGSWDSFL+IWN
Sbjct: 324 GMAVCTGSWDSFLKIWN 340


>AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeric G
           protein beta subunit1 protein.
          Length = 340

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAV TGSWDSFL+IWN
Sbjct: 324 GMAVCTGSWDSFLKIWN 340


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 257 HLPCYNGTKSETFTQPSTTIQSFNSIGVQ-DEHTDINFYR 141
           HL CYN  K +   +P   +  F+SIG + DE    N  R
Sbjct: 124 HLYCYNNLKPDELIEPVKNLARFHSIGAELDEEEGSNVPR 163


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -1

Query: 311 VKSCLALSLPSLHEALARHLPCYNGTKSETFTQPSTTIQSFNSIGVQDEHTDINFYRYTY 132
           VKSCL + + +L  AL     C  G     F  P T +Q    + + DE+  I FY   Y
Sbjct: 5   VKSCLIIIITNLLIALYFLSACRKGVTETGFVAP-TVLQIREKLEI-DENFPIVFYSTAY 62

Query: 131 ID 126
           +D
Sbjct: 63  LD 64


>Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical
           protein D2013.10 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 595 NELLSILVSQRLRPLVDRWRFNIMSLVIDV 684
           ++ L+ ++  R+ P+V  W  NI S V+DV
Sbjct: 152 DDFLNYMIFLRVTPIVPNWLINIASPVLDV 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,661
Number of Sequences: 27780
Number of extensions: 284718
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)