Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30031
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-7|CAA88744.1|  367|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF358857-1|AAK52772.1|  367|Caenorhabditis elegans REF-1 protein.      28   5.4  

>Z48809-7|CAA88744.1|  367|Caenorhabditis elegans Hypothetical
           protein T01E8.2 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 552 HGIQFNQPILKSVKAKIFSDI*TRPLIIYISKL*KYFEYTVLPRPFF 412
           H I   +   K++  + F     R L++  + L K+FE+++ P+P F
Sbjct: 236 HAIAEGKKTAKNIAFQFFKS--DRHLVVRCADLEKFFEFSLSPKPLF 280


>AF358857-1|AAK52772.1|  367|Caenorhabditis elegans REF-1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 552 HGIQFNQPILKSVKAKIFSDI*TRPLIIYISKL*KYFEYTVLPRPFF 412
           H I   +   K++  + F     R L++  + L K+FE+++ P+P F
Sbjct: 236 HAIAEGKKTAKNIAFQFFKS--DRHLVVRCADLEKFFEFSLSPKPLF 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,379
Number of Sequences: 27780
Number of extensions: 202928
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)