Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    41   6e-04
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    28   3.6  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +3

Query: 309 MPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNCTLTNALKQLASLVLLAEDIFSE 488
           MP   RAV P  LSR ++        I  +ELQ   N T+ N ++QL+SL   AE+IF E
Sbjct: 1   MPLTKRAVSPVNLSRGTI-----PSTIHRDELQCTANGTIANLVRQLSSLSKHAENIFGE 55

Query: 489 L 491
           +
Sbjct: 56  I 56


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 365 RRKWKAKNCR*RITSCN*LHFDECAQTARLAR 460
           RR+W A+NC+     CN      CA  AR +R
Sbjct: 542 RRQWMAENCQATCGWCNMNEAQLCASVARQSR 573


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = -2

Query: 382 GFPFSSRKLVRDKYLGSTARG-TKGISILVPKYSFTHSRTAKLNVIPTSIQHIITKNVR* 206
           G  FSS K + D  + S A     G++ILVPK        A L ++  +  ++       
Sbjct: 179 GTAFSSEKDI-DTQIKSIANSWLDGVNILVPKEFLERLPKAYLEIMEYAYAYVANSLNFI 237

Query: 205 PPL*INRHPDR*TFTKTLVFDKTCSSGYVLVDEKIF 98
           P   +    +  T  +T+ F ++ + G+   D+++F
Sbjct: 238 PSAKLIGQYENFTVDQTMFFIQSRNEGFTSFDDQVF 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544,519
Number of Sequences: 27780
Number of extensions: 239434
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)