Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30009
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    28   2.7  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    27   8.3  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    27   8.3  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 180 PGSGCDPWRYPRVD--CAIVPASPTAGTT 100
           PGS CDP RY  +D  C++ P + T  TT
Sbjct: 179 PGSACDPDRY-NIDGLCSLNPPTTTTTTT 206


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
            ZC84.6 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 229  CTTKQVCTKVGGIQ-RACLDPTLPYCNLGECSATPAEGCEP 348
            CT     T   G Q  A +D ++ YC  G+   T ++GC P
Sbjct: 890  CTIGHFVTCPAGFQCMAQIDGSMGYCCKGQPQLTASDGCPP 930


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 287 GSRHALCIPPTFVQTCLVVQSRQVLPMVVHGAHCGYQGADAIHGGIQGLT 138
           GS + +C P  F ++CL   S +++  +++  + G  G D +    Q LT
Sbjct: 509 GSYYCVCSPNMFGKSCLFSNSDKIIYQILNATY-GDLGPDKLDEMAQELT 557


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 230  QSRQVLPMVVHGAHCGYQGADAIHGGIQG 144
            Q  Q       GAH G QGA   H G QG
Sbjct: 1004 QGEQFGAQGAQGAHFGAQGAQGAHFGAQG 1032


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 230  QSRQVLPMVVHGAHCGYQGADAIHGGIQG 144
            Q  Q       GAH G QGA   H G QG
Sbjct: 1024 QGEQFGAQGAQGAHFGAQGAQGAHFGAQG 1052


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,888
Number of Sequences: 27780
Number of extensions: 213495
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)