Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.57 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.57 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.57 
AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    28   7.0  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   9.2  
AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical...    27   9.2  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           KLGW G+V +R D      +      G+ +R  GRP  +W D +  ++
Sbjct: 811 KLGWAGHVARRKDGRWTTLMTEWRPYGW-KRPVGRPPMRWTDSLRKEI 857


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 352  KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
            KLGW G+V +R D      +      G+ +R  GRP  +W D +  ++
Sbjct: 986  KLGWAGHVARRKDGRWTTLMTEWRPYGW-KRPVGRPPMRWTDSLRKEI 1032


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           KLGW G+V +R D      +      G+ +R  GRP  +W D +  ++
Sbjct: 725 KLGWAGHVARRKDGRWTTLMTEWRPYGW-KRPVGRPPMRWTDSLRKEI 771


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           KLGW G+V +R D      +      G+ +R  GRP  +W D +  ++
Sbjct: 337 KLGWAGHVARRKDGRWTTLMTEWRPYGW-KRPVGRPPMRWTDSLRKEI 383


>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 523 QTICETHMNTYRLPRNPSISS*VYLIFYEYSLPHS*LVLSYKSHCHFVSSHFHTIPILY 347
           + I   H  T  +  NP +SS  Y ++           +SY+S+  FV  HF  I I Y
Sbjct: 424 ENIITKHQRTVVVHNNPQLSSEFYFLY----------PMSYRSNAKFVGDHFGGILIFY 472


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = -1

Query: 400 KSHCHFVSSHFHTIPILYNS-LNL*IPFFP-TLCCLFIVNDVRVSIMLVRIWLHWSFLRC 227
           K + H   + F    IL NS ++  I     T+ C F    + +S++ +  +  ++ +  
Sbjct: 65  KPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYA--MMLSLLSIHFFYRYTSVTA 122

Query: 226 PLSISYTYFRRYIFAY*KYFTRFAYLGG 143
           P+ +   +  RYIF Y  Y   F+ + G
Sbjct: 123 PILLMKRFSCRYIFKYTLYILTFSSIWG 150


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 479 QSIHFFLGLPHLLRV*PSTFIVSTLLQISLSFRFITFPYHPNFIQFFKFI 330
           +S   F+G+  +LR   STF  +T + + +  +F+TF +   F+ FF  I
Sbjct: 135 KSTWLFIGILLILR---STFFTTTTV-VEIDGKFVTFDFLEVFLYFFNVI 180


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 282 TSLTINKQHRVGKNGIYKFKEL-YKIGMV--WKCDETK*Q*DL*ESTNYECGRLYS 440
           T   + ++ RV  NG+YKF  + +K G V  ++ ++T  Q +L +S  +E   L+S
Sbjct: 298 TECLVIRKDRVSSNGLYKFDTISFKDGSVKPYRRNDTTRQYELFKSEYFEAFGLFS 353


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 282 TSLTINKQHRVGKNGIYKFKEL-YKIGMV--WKCDETK*Q*DL*ESTNYECGRLYS 440
           T   + ++ RV  NG+YKF  + +K G V  ++ ++T  Q +L +S  +E   L+S
Sbjct: 298 TECLVIRKDRVSSNGLYKFDTISFKDGSVKPYRRNDTTRQYELFKSEYFEAFGLFS 353


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 304 CLFIVNDVRVSIMLVRIWLHWSFLRCPLSISYTYFRRYIFAY*KYFTRFAYL 149
           CL ++     ++  ++  L+W  ++    IS+ +F+ +  A   Y   FAY+
Sbjct: 250 CLHLMETRNKAVKTIKHTLNWVIIKVSKEISFNFFQTFRLA---YILMFAYM 298


>AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical
           protein Y73B3A.13 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 511 HISSGE*AKKWYMIEEYGRRKHVAP----TPGDWGEGQENDDERTI*KQ 645
           HIS  + AKK +   E+G  +++AP    T G+   G+EN D+  I K+
Sbjct: 6   HISKPQFAKKAFFWLEHGDEENIAPNILETEGE-SSGEENVDKTLIAKK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,323,885
Number of Sequences: 27780
Number of extensions: 359257
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)