Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30048
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    28   1.1  
Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    26   4.5  

>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -3

Query: 238 SWRESVNFSTM----LKFTRLYADHNMNFLFLYRYLFRKEIN 125
           +W E + F       L    LYAD  M  +FL  Y F +E N
Sbjct: 307 NWEEQLLFQAAGNPRLALRNLYADPRMAIIFLLEYTFHREDN 348


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -3

Query: 238 SWRESVNFSTM----LKFTRLYADHNMNFLFLYRYLFRKEIN 125
           +W E + F       L    LYAD  M  +FL  Y F +E N
Sbjct: 307 NWEEQLLFQAAGNPRLALRNLYADPRMAIIFLLEYTFHREDN 348


>Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical
           protein F46B3.11 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 275 KVMEQFKRVTLLFLARKC*FLYYVKIY*TLC*S*YEFLVFISVLIS*RNKYYIIKL 108
           K+ ++  + TLLF    C    + KI   L  S   F+VF++V     +KYY I+L
Sbjct: 43  KINQRRDKETLLFPITNC----FYKIIKALTRSLICFIVFLTVFNHTTSKYYFIQL 94


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 262 NSSASLYYSWRESVNFSTMLKFTRLYADHNMNFLFLY 152
           N+  S  Y      +++ MLKF + Y D   +F+ LY
Sbjct: 322 NNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLY 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,179,232
Number of Sequences: 27780
Number of extensions: 107150
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)