Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30046
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   142   2e-34
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.8  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  142 bits (345), Expect = 2e-34
 Identities = 63/77 (81%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 203
           GRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LS
Sbjct: 2   GRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLS 61

Query: 204 SEALEAGRICCNKYLVK 254
           SEALEA RIC NKY+VK
Sbjct: 62  SEALEAARICANKYMVK 78



 Score =  133 bits (322), Expect = 1e-31
 Identities = 62/86 (72%), Positives = 69/86 (80%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K+CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQ 508
           +R  +      IEA RRAKFKFPGRQ
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQ 163



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 645
           P    I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 454 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 332
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 384 GLPNAPRIPVWSLSAPA 334
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 81  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 535 FTKYERDEFEKLREEGRLANDGCIVQYR 618
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,789,342
Number of Sequences: 27780
Number of extensions: 403855
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)