Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30038
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    37   0.012
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    37   0.012
U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF003134-3|AAB54140.2|  314|Caenorhabditis elegans Hypothetical ...    29   4.1  

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 332 RRTKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPG 508
           + +    DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PG
Sbjct: 69  KNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPG 128



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 499 IPGYLITNITYEVTDDNALYVDFXSXXXXXXXXXXXXHSYFNLAGHDTGVQEIYNHIFVI 678
           +PG    ++TY V D N L ++  +            H+Y+NL G DT    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 679 NAD 687
            AD
Sbjct: 182 EAD 184



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 GFSVSVIXYGATIQSIQVPDKYGITSDVVLG 255
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRI 332
           GFD +D +  ++   +G TVGR ANRI
Sbjct: 43  GFDTIDEF-EKDAASIGKTVGRVANRI 68


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 332 RRTKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPG 508
           + +    DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PG
Sbjct: 69  KNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPG 128



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 499 IPGYLITNITYEVTDDNALYVDFXSXXXXXXXXXXXXHSYFNLAGHDTGVQEIYNHIFVI 678
           +PG    ++TY V D N L ++  +            H+Y+NL G DT    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 679 NAD 687
            AD
Sbjct: 182 EAD 184



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 GFSVSVIXYGATIQSIQVPDKYGITSDVVLG 255
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRI 332
           GFD +D +  ++   +G TVGR ANRI
Sbjct: 43  GFDTIDEF-EKDAASIGKTVGRVANRI 68


>U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical
           protein C54G7.1 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 CSGFDELDG-YVNRNTPYLGTTVGRCANRIGGQNSASTARLINSLTTLGKI 395
           C    E D  +VN N  + G++  R   ++  Q S +   L++   T+GK+
Sbjct: 162 CKSVYEYDKCFVNENYDFCGSSAARFLVKLNHQTSHTILELLDQTNTIGKL 212


>AF003134-3|AAB54140.2|  314|Caenorhabditis elegans Hypothetical
           protein ZC581.2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 98  MLRISDSIMERRFQNSHGGHLTASQXPSXRMGLRYSQFRYRTNTE-SPVTLF 250
           +L++ D  M RRF+N  G        P  R  LRYS  R     E +PV  F
Sbjct: 188 VLKLVDYGMVRRFKNVDGTRRKQRYKPGFRGTLRYSSVRVHDGKEQTPVDDF 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,533
Number of Sequences: 27780
Number of extensions: 320538
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)