Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30035
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   138   4e-33
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    28   4.5  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    28   4.5  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  138 bits (333), Expect = 4e-33
 Identities = 63/83 (75%), Positives = 69/83 (83%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           IFDLG KRA VD FP CVH++S+E E LSSEALEA RIC NK +VK  GKD FH+R+R H
Sbjct: 33  IFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVTRINKMLSCAGADRLQTGM 115



 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 42/81 (51%), Positives = 53/81 (65%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           A+GKPQG V RV  G  + S+R  +      IEA RRAKFKFPGRQ    S  WG TK+ 
Sbjct: 118 AYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWD 177

Query: 437 RDEFEKLREEGRLANDGXIVQ 499
           R+++E++R EGRL +DG  VQ
Sbjct: 178 REDYERMRAEGRLRSDGVGVQ 198


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 574  IDQIIH*GSQPEPSSKRREVHVRAVLHNXAVISEAALFTQLLKL 443
            + Q+IH  + P PSS     H  +V+    V +E  LF+QL K+
Sbjct: 1618 VQQVIHENATPTPSSTSMVGHAMSVIPGSKVATE--LFSQLGKV 1659


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 574  IDQIIH*GSQPEPSSKRREVHVRAVLHNXAVISEAALFTQLLKL 443
            + Q+IH  + P PSS     H  +V+    V +E  LF+QL K+
Sbjct: 1618 VQQVIHENATPTPSSTSMVGHAMSVIPGSKVATE--LFSQLGKV 1659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,670,224
Number of Sequences: 27780
Number of extensions: 225751
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)