Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    31   0.30 
Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical p...    28   2.1  
Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical p...    28   2.1  
Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AL032646-6|CAA21679.1|  238|Caenorhabditis elegans Hypothetical ...    28   2.1  
AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride ...    28   2.1  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical pr...    27   2.8  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   2.8  
AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride ...    27   2.8  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    27   4.9  
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        27   4.9  
Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type chlo...    26   6.4  

>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 25  FKIKSIMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKV 156
           F +KSI+YF  Y  VVL+ + L++ +G     I   SLK G K+
Sbjct: 187 FHLKSIIYFQVYMTVVLLVIPLVVMAGLYGNVI--TSLKSGIKL 228


>Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAG 192
           ++Y++ YF++V + +S+ + +G   P   + +   GG+++ +   VL   G
Sbjct: 403 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLMGETMVVLFPEG 451


>Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAG 192
           ++Y++ YF++V + +S+ + +G   P   + +   GG+++ +   VL   G
Sbjct: 434 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLMGETMVVLFPEG 482


>Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAG 192
           ++Y++ YF++V + +S+ + +G   P   + +   GG+++ +   VL   G
Sbjct: 403 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLMGETMVVLFPEG 451


>Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAG 192
           ++Y++ YF++V + +S+ + +G   P   + +   GG+++ +   VL   G
Sbjct: 434 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLMGETMVVLFPEG 482


>AL032646-6|CAA21679.1|  238|Caenorhabditis elegans Hypothetical
           protein Y54E2A.7 protein.
          Length = 238

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 61  FIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAGTAHEVYSHVR 222
           F V   ALS  +CS + +P    KS  KG K   +G K   A G+     + V+
Sbjct: 30  FSVAAFALSATMCSKKKNP----KSTSKGSKSTTRGSKDAVARGSKDPTVAKVK 79


>AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAG 192
           ++Y++ YF++V + +S+ + +G   P   + +   GG+++ +   VL   G
Sbjct: 403 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLMGETMVVLFPEG 451


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSG 105
           ++YFL YFI+V + ++L I SG
Sbjct: 477 LIYFLFYFIIVPICITLYIPSG 498


>Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical
           protein T27D12.2a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSG 105
           ++YFL YFI+V + ++L I SG
Sbjct: 477 LIYFLFYFIIVPICITLYIPSG 498


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSG 105
           ++YFL YFI+V + ++L I SG
Sbjct: 477 LIYFLFYFIIVPICITLYIPSG 498


>AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSG 105
           ++YFL YFI+V + ++L I SG
Sbjct: 439 LIYFLFYFIIVPICITLYIPSG 460


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 88  LMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAGTAHEVYS 213
           L + +G  DP+I    + +  KVIA+G K +      H++ S
Sbjct: 221 LFLSNGPGDPEICAPLVDRLAKVIARGDKPIFGICLGHQILS 262


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 7   LNILHLFKIKSIMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKK 144
           L+I+H F I   +YF+  F+V          SG+ + KI  K++ K
Sbjct: 125 LDIIHFFNIPISLYFICVFLVSSKTHKRTTRSGRKNKKIEDKNVIK 170


>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 203 SWAVPAAVRTLKPLAITFPPFFRLLTGI 120
           SW +P AV  +    I FP  F  L GI
Sbjct: 107 SWNLPCAVTAVFKYIIAFPIIFHTLNGI 134


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 203 SWAVPAAVRTLKPLAITFPPFFRLLTGI 120
           SW +P AV  +    I FP  F  L GI
Sbjct: 107 SWNLPCAVTAVFKYIIAFPIIFHTLNGI 134


>Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVI 159
           ++Y++ YF++V + +S+ + +G   P   + +   GG++I
Sbjct: 434 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLI 471


>Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVI 159
           ++Y++ YF++V + +S+ + +G   P   + +   GG++I
Sbjct: 434 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLI 471


>AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type
           chloride channel CLH-2b protein.
          Length = 880

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMICSGQADPKIPVKSLKKGGKVI 159
           ++Y++ YF++V + +S+ + +G   P   + +   GG++I
Sbjct: 434 VLYYILYFVLVAICISINVPAGVFVPSFIIGA--AGGRLI 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,947,620
Number of Sequences: 27780
Number of extensions: 124199
Number of successful extensions: 352
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)