Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30001
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    68   8e-12
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 55/124 (44%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
 Frame = +3

Query: 348 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQR**SAPP 524
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q       
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQ------- 119

Query: 525 PEFHSATSNCQNTSMM-----ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFPSEQRKTD 689
             F  ATS   N S +     I     +  S  Q   K +  S    K     SEQRK D
Sbjct: 120 -AFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKTGKNIFAS---GKTEYTVSEQRKKD 175

Query: 690 QKTV 701
            KTV
Sbjct: 176 IKTV 179


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 279 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 413
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 513 SAPPPEFHSATSNCQN-TSMMITSRRIRSASNVQSNAKRV-MTSLPQKKRNTFPSEQR 680
           S P  + +S TS+ QN T+ MI+S    ++SN  S+   V  T+ P+++    PSE++
Sbjct: 323 STPNLQINSTTSSIQNSTTSMISSTISSTSSNSTSSTINVPKTAAPEEEIEEGPSEEK 380


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 720 LNQSLVELSSDRFCAAQMGTYFSFFVAKMSSPSLR 616
           LN SLV+LS  RF       +   ++  +S+P L+
Sbjct: 254 LNSSLVDLSYSRFTEKDFNLFLKHWILGLSNPDLK 288


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 513 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFPSEQRKTDQ 692
           S PPP   ++T + QN+     S+  R     Q N +R    + +++ ++ P  Q + + 
Sbjct: 106 SVPPPTIGASTHSNQNSRQQEPSQNRRRRGG-QQNTQRRQLEIQEQRGDSHPQNQSRQNN 164

Query: 693 K 695
           +
Sbjct: 165 R 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,335
Number of Sequences: 27780
Number of extensions: 325316
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)