Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00030
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   105   4e-23
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   9.1  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   9.1  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      28   9.1  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  105 bits (252), Expect = 4e-23
 Identities = 49/66 (74%), Positives = 57/66 (86%)
 Frame = +1

Query: 55  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 234
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    ++E
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76

Query: 235 RSFRKF 252
             FRKF
Sbjct: 77  ADFRKF 82



 Score =  104 bits (250), Expect = 7e-23
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = +3

Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
           F + +LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138

Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 503
            FT K     +KT Y + +++R IR +M
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEM 166



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 33/58 (56%), Positives = 46/58 (79%)
 Frame = +2

Query: 491 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 664
           + E +  I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPK 220


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 417  IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 557
            IGF  ++ L   + C   + Q R   ++ C S  + S+    G W T
Sbjct: 868  IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 417  IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 557
            IGF  ++ L   + C   + Q R   ++ C S  + S+    G W T
Sbjct: 868  IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 659 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 543
           ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 104 ASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 417  IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 557
            IGF  ++ L   + C   + Q R   ++ C S  + S+    G W T
Sbjct: 868  IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,835
Number of Sequences: 27780
Number of extensions: 382611
Number of successful extensions: 1058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)