Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00020
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 105 4e-23
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF016684-6|AAB66210.1| 272|Caenorhabditis elegans Hypothetical ... 29 4.3
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.6
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 28 5.6
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 9.8
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 105 bits (251), Expect = 4e-23
Identities = 51/88 (57%), Positives = 62/88 (70%)
Frame = +3
Query: 243 FPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 422
F + +LIAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I
Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138
Query: 423 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 506
FT K +KT Y + +++R IR +M
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEM 166
Score = 103 bits (246), Expect = 2e-22
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +1
Query: 58 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 237
VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL ++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 238 RSFRK 252
FRK
Sbjct: 77 ADFRK 81
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +2
Query: 494 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
+ E + I ++VT +L+EVV+KLIPDSI KDIEK IRK K + P
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRP 219
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 601 CHGIYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
C +YPL++V KVK++KRP+ ++ +L +LHG+
Sbjct: 199 CSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD 232
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 700 RREVPSTSRSRNGASSTLSLSDCKHRAEG----RCHGS 599
R+ PSTS SRN SS+L S + RCHG+
Sbjct: 35 RKAAPSTSSSRNSISSSLRSSSNNNNNSSNTMPRCHGT 72
>AF016684-6|AAB66210.1| 272|Caenorhabditis elegans Hypothetical
protein F45C12.12 protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 458 DVLRPAHSGQSNQKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAI 637
D S S + E EI RDV+ ++ +++ + PD + + AA TL F +
Sbjct: 158 DFFHELFSASSTESEIPEIPIRDVSAEDMGLLLSTIYPDLVFPTDKTAAKLLTLANRFQM 217
Query: 638 R 640
R
Sbjct: 218 R 218
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L PA S ++++ + EI+ +DVT E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L P S ++++ E EI+ +DVT E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L PA S ++++ + EI+ +DVT E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L P S ++++ E EI+ +DVT E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L PA S ++++ + EI+ +DVT E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 443 LEPTQDVLRPAHSGQSNQKENVEII-TRDVT-NSELREVVNKL 565
+EPT + L P S ++++ E EI+ +DVT E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 488 SNQKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAA 604
SNQ N+ I + + E+ ++ KL+ +SI K ++AA
Sbjct: 190 SNQTANIVIDPGSIDSEEINKLAAKLVEESILKASQEAA 228
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = -3
Query: 506 HFLSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 333
H+L+ S + + AR L +G + + + + C H NV + L F P
Sbjct: 33 HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92
Query: 332 -ELIGCEVHAVEVAEHITSLHIFGD*SN-LRKDLSASVSACRSARET 198
+ +G +++ + L + SN R AC S ET
Sbjct: 93 ADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFRRFFACHSRNET 139
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = -3
Query: 506 HFLSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 333
H+L+ S + + AR L +G + + + + C H NV + L F P
Sbjct: 33 HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92
Query: 332 -ELIGCEVHAVEVAEHITSLHIFGD*SN-LRKDLSASVSACRSARET 198
+ +G +++ + L + SN R AC S ET
Sbjct: 93 ADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFRRFFACHSRNET 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,193
Number of Sequences: 27780
Number of extensions: 354989
Number of successful extensions: 1168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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