Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00019
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 108 2e-24
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 29 0.96
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 29 0.96
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 29 0.96
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 29 0.96
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 29 0.96
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 29 0.96
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 1.7
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 1.7
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 3.9
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 3.9
AL021473-1|CAA16305.1| 570|Caenorhabditis elegans Hypothetical ... 27 5.1
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical p... 26 9.0
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 108 bits (259), Expect = 2e-24
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +1
Query: 1 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 180
GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGK VY+Y+A +T G
Sbjct: 16 GRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTG- 74
Query: 181 PRGKKTKLRAIWGKVTRPHGNSGSV 255
T+ RAIWGK+TRPHGN+G+V
Sbjct: 75 -HTVATRTRAIWGKITRPHGNAGAV 98
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +3
Query: 255 RAKFKSNLPAQAMGHRIRVMLYPSRI 332
RAKF N+P A+G RIRV+LYPS I
Sbjct: 99 RAKFHHNIPPSALGKRIRVLLYPSNI 124
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 52 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 234 WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 118
W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 852 WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 234 WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 118
W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 963 WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 23 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 163
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 23 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 163
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
>AL021473-1|CAA16305.1| 570|Caenorhabditis elegans Hypothetical
protein Y20C6A.2 protein.
Length = 570
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 292 IAWAGRLDLNLARHCQSCHVGGSP 221
+ WA R +N +R C +GG P
Sbjct: 411 LEWARRCAMNFSRQCDEVDLGGEP 434
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 141 IDAMLASIKDCIITVFCSFNLEESGVLVL 55
IDAM+ D +++V S LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520
>Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical
protein F40D4.7 protein.
Length = 295
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -1
Query: 159 LLSSVHIDAMLASIKDCIITVFCSFNLEESGVLVLVA*TTLISCEYGLCV 10
L+ S+++ ++ SI CI+ +F ++ +VL ++ YGL V
Sbjct: 10 LVLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFRYFLAAVYGLTV 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,019
Number of Sequences: 27780
Number of extensions: 199648
Number of successful extensions: 486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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