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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    49   2e-06
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    49   2e-06
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    49   2e-06
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   3.3  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   4.3  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   4.3  
U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    27   10.0 
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    27   10.0 
AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    27   10.0 

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 29/57 (50%)
 Frame = +2

Query: 83  AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
           A R   T    KDIDSAAK+                    FG+L+IGYARNPSLKQQ
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 62



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEPLPQAAVFSYAILGFALSE 291
           + P  +  +FSYAILGFALSE
Sbjct: 55  RNPSLKQQLFSYAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 29/57 (50%)
 Frame = +2

Query: 83  AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
           A R   T    KDIDSAAK+                    FG+L+IGYARNPSLKQQ
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 62



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEPLPQAAVFSYAILGFALSE 291
           + P  +  +FSYAILGFALSE
Sbjct: 55  RNPSLKQQLFSYAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 29/57 (50%)
 Frame = +2

Query: 83  AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
           A R   T    KDIDSAAK+                    FG+L+IGYARNPSLKQQ
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 86



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEPLPQAAVFSYAILGFALSE 291
           + P  +  +FSYAILGFALSE
Sbjct: 79  RNPSLKQQLFSYAILGFALSE 99


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 341 KAKSSRNAIIRQNRPIASDKAKPRMAYENTAA 246
           K    ++AI  Q  PI+S++A P  A  NTAA
Sbjct: 434 KTNYGQSAIHHQAAPISSNRASPMPAQSNTAA 465


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 379 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 465
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = -2

Query: 229  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYH 53
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 52   LCMGGYCCKWSHQC 11
                G  C+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = -2

Query: 229  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYH 53
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 52   LCMGGYCCKWSHQC 11
                G  C+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical
           protein F13H8.11 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 39  PPIHRWYLLSLHSSLQCGPSRPYRSLRTLTLLPNS 143
           PP+   YL ++ +S  C PSR  R LR  +   +S
Sbjct: 368 PPVECPYLRTIQNSENCEPSREMRFLRVPSAFASS 402


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 106 YGLEGPHCRELCRDSRYHLCMGGYC-CKWSH 17
           YG E P  RE+C   +Y L   G C  +W +
Sbjct: 133 YGWENPRVREICESKKYQL---GLCQIRWPY 160


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 199 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELC 71
           C NT   TS S+C C   +   S    +     L  P C++ C
Sbjct: 51  CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 145 WCWCSDSGSSWFRSWYWNSLRLPHH 219
           WC  + S SSW +   W +  L HH
Sbjct: 19  WCNMNISQSSWIKCRDWMAFALSHH 43


>AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical
          protein Y68A4B.1 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 61 RYHLCMGGYCCKWSHQCQSC 2
          +Y +  G YCC  SH C  C
Sbjct: 6  KYEMNSGVYCCWRSHSCGQC 25


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 145 WCWCSDSGSSWFRSWYWNSLRLPHH 219
           WC  + S SSW +   W +  L HH
Sbjct: 19  WCNMNISQSSWIKCRDWMAFALSHH 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,339
Number of Sequences: 27780
Number of extensions: 280054
Number of successful extensions: 1143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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