Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00008
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical...    31   0.73 
U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astaci...    30   1.7  
U40797-7|AAB37546.1|  195|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical
           protein Y59A8B.22 protein.
          Length = 552

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 221 FLIENREYRQGLKLDANVDRYGDRLVWGNNGTVADNPEYYGFIIQP 84
           + +  R   Q +K +  V R  +  +W  +GT+ DN  Y GFII P
Sbjct: 120 YTVHTRTRLQEMKPETAVVREHEEFLW-LHGTLEDNENYAGFIIPP 164


>U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astacin
           protease protein29 protein.
          Length = 542

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -2

Query: 428 ILVTLRRHSTVDVLRYAIEFWRPDHVDDIGVSTIPNNTNPRYIFAS*RTQYKQLFFPTIL 249
           IL     H   D L+Y++E    D      VSTI N +           +Y+ + F   +
Sbjct: 45  ILKPSATHRLFDTLQYSVEEQYSDSHLSFDVSTIYNYSEKPISIGKLNKKYRDILFEGDM 104

Query: 248 VSSRVYFQLFLIEN--REYRQGLK 183
             S  Y QL +I N   EYR+ +K
Sbjct: 105 AIS--YKQLSMIVNGSTEYRKAIK 126


>U40797-7|AAB37546.1|  195|Caenorhabditis elegans Hypothetical
           protein C28C12.3 protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 149 GGPRTGPRSRPASGPAG 199
           GGPR GPR  P  GP G
Sbjct: 177 GGPRDGPRGGPRGGPRG 193


>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 440 TNILILVTLRRHSTVDVLRYAIEFWRPDHVDDIGVSTIPNNTNPRYIFAS 291
           T +L ++    +ST     Y + FW PD+ ++I  S   +   PRY+ A+
Sbjct: 169 TLMLCMMFWTLYSTWQFAFYRV-FWLPDNANEICKSMFESFITPRYVLAT 217


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
           protein F59F3.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = -2

Query: 428 ILVTLRRHSTVDVLRYAIEFWRPD---HVDDIGVSTIPNNTNPRYIFAS*RTQYKQLFFP 258
           + +T+R  S+  +     E+++PD   H++ I +S  P +    Y   +   Q++++  P
Sbjct: 456 VQITVREPSSFFISNQ--EYYKPDTNLHIECISISIPPADVVFEYKTKN-SEQFQEIE-P 511

Query: 257 TILVSSRVYFQLFLIENREYRQGLKLDANVDRYGDRLVWGN 135
             LVS    F   LI N  + +G+ L  +  R G+R +  N
Sbjct: 512 NKLVSVGGTFDRGLIYNVTFTEGMDLKCSSIRKGNRAITVN 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,531
Number of Sequences: 27780
Number of extensions: 388146
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)