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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00001
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   118   3e-27
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   118   3e-27
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    46   2e-05
AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical ...    46   2e-05
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    33   0.16 
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    31   0.65 
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    31   0.65 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    30   1.1  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    30   1.5  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    30   1.5  
U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    29   2.0  
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     29   2.0  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   6.1  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   6.1  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   8.1  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    27   8.1  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  118 bits (285), Expect = 3e-27
 Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
 Frame = +2

Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
           +E+S ILEERILG     +LEET                     E     D G+    +G
Sbjct: 7   SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 62

Query: 350 NGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTI 526
             +NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGN +  +G I
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 527 DTKSRMRVGIKAPGIIP 577
               R RV +KAPGIIP
Sbjct: 123 ANARRSRVEVKAPGIIP 139



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
           YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 43  YGLKNIQAEEMVEFDSGIKGMAM 65


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  118 bits (285), Expect = 3e-27
 Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
 Frame = +2

Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
           +E+S ILEERILG     +LEET                     E     D G+    +G
Sbjct: 34  SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89

Query: 350 NGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTI 526
             +NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGN +  +G I
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 527 DTKSRMRVGIKAPGIIP 577
               R RV +KAPGIIP
Sbjct: 150 ANARRSRVEVKAPGIIP 166



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
           YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70  YGLKNIQAEEMVEFDSGIKGMAM 92


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
           YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70  YGLKNIQAEEMVEFDSGIKGMAM 92



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 185 AEISTILEERILGAAPKADLEET-----XXXXXXXXXXXXXXXEEHPG*GDGGVLLRPQG 349
           +E+S ILEERILG     +LEET                     E     D G+    +G
Sbjct: 34  SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89

Query: 350 NGLNLEPDNVGVVVFGN 400
             +NL+ DNVGVVV GN
Sbjct: 90  MAMNLDVDNVGVVVLGN 106



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 401 DKLIKEGDIVKRTGAIVDVP-VGEQILGRVVDALGNL*WQGTIDTKSRMRVGIKAPGIIP 577
           +++++    +K     +DV  VG  +LG  +D       +G I    R RV +KAPGIIP
Sbjct: 78  EEMVEFDSGIKGMAMNLDVDNVGVVVLGNPIDG------KGPIANARRSRVEVKAPGIIP 131


>AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical
           protein H28O16.1b protein.
          Length = 146

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
           YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70  YGLKNIQAEEMVEFDSGIKGMAM 92



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
 Frame = +2

Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
           +E+S ILEERILG     +LEET                     E     D G+    +G
Sbjct: 34  SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89

Query: 350 NGLNLEPDNVGVVVFGNDKL 409
             +NL+ DNVGVVVFGNDK+
Sbjct: 90  MAMNLDVDNVGVVVFGNDKI 109


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +2

Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTIDTKSRMRVGIK 559
           + + G + L++ G  V  TG  + +PVG + LGR+++ +G  +  +G I +K+   +  +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAE 178

Query: 560 APGII 574
           AP  +
Sbjct: 179 APEFV 183


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
           PPSP P  ++    S++ T  Q TT S ++A G+        ++ I     ++  C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
           PPSP P  ++    S++ T  Q TT S ++A G+        ++ I     ++  C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
           PPSP P  ++    S++ T  Q TT S ++A G+        ++ I     ++  C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
           PPSP P  ++    S++ T  Q TT S ++A G+        ++ I     ++  C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 347 GNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 499
           G  + LE D   + V+     +  GD V RTG  + V +G  I+G + D +
Sbjct: 41  GEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGI 91


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQ-DTTVSSRSALGAAPRILSSRMVEISAAL 178
           PP PQP  + + N   T+   Q  TT S+ +  G  P   +S    ++AA+
Sbjct: 112 PPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAV 162


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 327 PPSPQPGCSSSHNTSDTITNAQ-DTTVSSRSALGAAPRILSSRMVEISAAL 178
           PP PQP  + + N   T+   Q  TT S+ +  G  P   +S    ++AA+
Sbjct: 109 PPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAV 159


>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 615 LDTSLHRXTXRHTGMIPGALIPTLIRDFVSIVPCH 511
           +D  +HR +    G +   + P L RDF+S +P H
Sbjct: 56  MDKIVHRLSHYQLGKVDNFIRPMLQRDFISNLPAH 90


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 615 LDTSLHRXTXRHTGMIPGALIPTLIRDFVSIVPCH 511
           +D  +HR +    G +   + P L RDF+S +P H
Sbjct: 56  MDKIVHRLSHYQLGKVDNFIRPMLQRDFISNLPAH 90


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 326 GVLLRPQGNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDV 457
           G++ RP   GL  +P  +  V+  N  L +  +I +R G +VDV
Sbjct: 468 GMMRRPSRTGL--QPLPLENVLRNNSTLARVAEIARRAGVVVDV 509


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 324 PSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSS 205
           P+  P C SSH TS++ T++   +VS  + + +A  ILS+
Sbjct: 698 PTSPPSCHSSHVTSNS-THSTHISVSFPNTVTSASSILSN 736


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 324 PSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSS 205
           P+  P C SSH TS++ T++   +VS  + + +A  ILS+
Sbjct: 698 PTSPPSCHSSHVTSNS-THSTHISVSFPNTVTSASSILSN 736


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 171 PPTKLPRSPPSSKRGSLEPRPR 236
           PP  LP  PPS ++  LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 459  PSESRSLGV**TLWETYDGKGQ 524
            P+ S S+GV  T+WETY   GQ
Sbjct: 1038 PASSHSVGVQPTIWETYRVLGQ 1059


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 123 WRYPQWPWHLENYMSQPPTKLPRSPPSSKRGSLEPRPRLI 242
           W  P  PW    +  +PP  LP  PP  +    + +P+++
Sbjct: 59  WDRPPPPWRRPPWHRRPPWGLPPPPPPPEPEPQQDQPQVM 98


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 171 PPTKLPRSPPSSKRGSLEPRPR 236
           PP  LP  PPS ++  LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 463 DGNVYDSTSTLDNISFFDKLVITKYY--HTHIVRFQVKAIPLRPEENSTISSAWMFFKP* 290
           DG   D+   L  IS ++    +K+Y    H++R   K I  +  + ST SS+W F K  
Sbjct: 249 DGERVDADDELSGISSYEAAP-SKFYMLEDHVIRTN-KKINYK-NDVSTDSSSWKFAKVQ 305

Query: 289 HERYHHQ 269
             R+H +
Sbjct: 306 ISRFHFE 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,919
Number of Sequences: 27780
Number of extensions: 294860
Number of successful extensions: 1083
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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