Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13f
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical
           protein ZC376.6 protein.
          Length = 1152

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 201 LAVRHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSGQVF--DRYTPNMLY 374
           + ++ DK   + E    +  I K+ D S    PT     + +  S Q+     Y P++L 
Sbjct: 144 MMLKKDKDTFIDEIVDLVRDIQKHNDASMSSQPTWIDRLSVEKISNQILMLQNYLPSLLT 203

Query: 375 TDMLLEPAMWAHNPTMLDDLV 437
            + ++   ++ H P ++++L+
Sbjct: 204 VEEIINALLFEHGPDVIENLI 224


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
 Frame = +3

Query: 210 RHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSGQVFDRYTPNMLYTDMLL 389
           +  KG+ +Y   L ++ I K  D  +   PTT T    +L      +++ P ++    ++
Sbjct: 372 KQQKGVPVYTLFLKIDNISKLRDVLQCFDPTTLT----ELNINMDTNKHKPEIIEFGDIV 427

Query: 390 EPAMW--AHNPTMLDDLVNI--SHFSWSPVGFIQNNESALAILNNVGQVDIIAPKENR 551
           E   W  A    + +  V+I   HFS     +++  + +   ++ + +VD  AP+  R
Sbjct: 428 EMDQWKNAKEINLRNFFVSIPFEHFSHCESAYVEVWKISADDIHKLIEVDFNAPEFRR 485


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
 Frame = +3

Query: 210 RHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSGQVFDRYTPNMLYTDMLL 389
           +  KG+ +Y   L ++ I K  D  +   PTT T    +L      +++ P ++    ++
Sbjct: 372 KQQKGVPVYTLFLKIDNISKLRDVLQCFDPTTLT----ELNINMDTNKHKPEIIEFGDIV 427

Query: 390 EPAMW--AHNPTMLDDLVNI--SHFSWSPVGFIQNNESALAILNNVGQVDIIAPKENR 551
           E   W  A    + +  V+I   HFS     +++  + +   ++ + +VD  AP+  R
Sbjct: 428 EMDQWKNAKEINLRNFFVSIPFEHFSHCESAYVEVWKISADDIHKLIEVDFNAPEFRR 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,079
Number of Sequences: 27780
Number of extensions: 311071
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)