Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08r
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF039711-3|AAB96709.1|  314|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical
           protein T19C9.4 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 174 FYTYMHTKCNLKYNTL----FLKYFIKIVYFFNVFCEEIQIIKFYL 49
           +Y   +TKCNL YN L     + Y I I+ FF++     Q++ FY+
Sbjct: 8   YYATNYTKCNLPYNILATWQAVAYPIHIIQFFSL---PFQVLAFYI 50


>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 174 FYTYMHTKCNLKYNTLFLKYFIKIVYFFNVFCE-EIQIIKFYL 49
           +Y   ++KCNL YN L     +        FC   +Q++ FY+
Sbjct: 8   YYATNYSKCNLPYNILATWQAVAYPIHIIQFCSLPVQVLAFYI 50


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 174 FYTYMHTKCNLKYNTL----FLKYFIKIVYFFNVFCEEIQIIKFYL 49
           +Y   +TKCN+ YN L     + Y I I+ F ++     QI+ FY+
Sbjct: 8   YYATNYTKCNISYNILATWQAVAYPIHIIQFISL---PFQILAFYI 50


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 114 FIKIVYFFNVFCEEIQIIKFYLNHMTLAL 28
           F++ V +FN+FC  + +  FYL H  L++
Sbjct: 23  FLRSVLYFNLFCSAVAV--FYLIHTWLSI 49


>AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical
           protein Y14H12B.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 358 P*SAPYLYELQGSSSFTKIYVNFFSIFTVDKRHKLKSCQNIIYITRN 218
           P +AP    L+    F K+YVN  +   +D+  +L   QN++ + RN
Sbjct: 278 PPAAPETTSLRDFLDFVKVYVNTLNSAQMDEARRL--IQNLLAVYRN 322


>AF039711-3|AAB96709.1|  314|Caenorhabditis elegans Hypothetical
           protein F49D11.3a protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 334 ELQGSSSFTKIYVNFFSIFTVDKRHKLKSC 245
           +  G   F   +VNF  +F V  +HKL SC
Sbjct: 42  DFSGVEEFIVPFVNFTQLFYVAPKHKLISC 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,060
Number of Sequences: 27780
Number of extensions: 313813
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)