Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    33   0.17 
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   8.5  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   8.5  

>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 376  VWREPSMLADNEGRGVFCEHVQITCCFLSF*CRNQGKWRS 495
            VW       DN  RG  C+H   TC  L F C N G  R+
Sbjct: 1385 VWNNTVCNCDNNWRGAHCQHQMDTC--LDFPCNNDGVCRT 1422


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  MFFWLPYVLVFLSILFSYSNGQADNFTTM 155
           +F   P  LVFLSI F+Y +   +NF  +
Sbjct: 270 IFLLAPAALVFLSIFFNYYDQSLNNFIVL 298


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 303  RIGGGANLTLPLKEVFPGGLPNR 371
            RIG   NLT+ LKE + GG   R
Sbjct: 2363 RIGNAVNLTVALKESYDGGFKPR 2385


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 556  LCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRE 455
            LC P+ NNS  ++    PWT  +   G G++ R+
Sbjct: 1537 LCPPLTNNSWQIS----PWTHCSVSCGGGVQRRK 1566


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 556  LCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRE 455
            LC P+ NNS  ++    PWT  +   G G++ R+
Sbjct: 1537 LCPPLTNNSWQIS----PWTHCSVSCGGGVQRRK 1566


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 303  RIGGGANLTLPLKEVFPGGLPNR 371
            RIG   NLT+ LKE + GG   R
Sbjct: 2363 RIGNAVNLTVALKESYDGGFKPR 2385


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 303  RIGGGANLTLPLKEVFPGGLPNR 371
            RIG   NLT+ LKE + GG   R
Sbjct: 2363 RIGNAVNLTVALKESYDGGFKPR 2385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,541
Number of Sequences: 27780
Number of extensions: 306746
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)