Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a01r
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    29   4.8  

>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 391  NSGFVLWQSTNRGYNSIGINSYSTRSQNKTKLYYLCPVGK 510
            N   VLW     G N + I+  +T S+N     Y  P G+
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGE 1000


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 391  NSGFVLWQSTNRGYNSIGINSYSTRSQNKTKLYYLCPVGK 510
            N   VLW     G N + I+  +T S+N     Y  P G+
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGE 1000


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 391  NSGFVLWQSTNRGYNSIGINSYSTRSQNKTKLYYLCPVGK 510
            N   VLW     G N + I+  +T S+N     Y  P G+
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGE 1000


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 391  NSGFVLWQSTNRGYNSIGINSYSTRSQNKTKLYYLCPVGK 510
            N   VLW     G N + I+  +T S+N     Y  P G+
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGE 1000


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,684
Number of Sequences: 27780
Number of extensions: 277620
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)