Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13f
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    29   2.1  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    27   8.4  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    27   8.4  
U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    27   8.4  
AF016677-8|AAB66140.3|  310|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    27   8.4  

>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 224 NPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNTDINPTIR 403
           NP N     F +RN+R   +    N+  V+R+N+N N+ T   +       ++  N   R
Sbjct: 614 NPRNYSNRSFHQRNQRGHSSSNRFNSPFVSRNNYNNNSETTEGSSRRSEYNSSSSNHHSR 673

Query: 404 DAYLGKSD 427
            +Y G  D
Sbjct: 674 SSYRGNRD 681


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 633 PPSSRPA--LPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCP---KPRPTAGTPLAAVA 475
           P S+ P    P+  AP + PTR      APV  +  VK  P   +P P  G P AAVA
Sbjct: 243 PASAAPTRRAPSPKAPVVAPTRRAPSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVA 300


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 538 KERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVH 428
           K+   +S  +++S H S+ SS+ +  K  P  +N+V+
Sbjct: 176 KQESSVSSCSSESSHCSASSSLSKTEKPEPENSNFVN 212


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
            C37C3.6c protein.
          Length = 1487

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 238  PVPTLHQAQSSFLPNVDYQQC*LRNKIQLQRQQPNCCYCSWLAQQPEY*HQSDHQRCLPR 417
            P P   Q    +LP  + QQ  +++  Q Q QQP         QQP+   QS    C  R
Sbjct: 1216 PPPPPQQNAQQYLPTPEVQQIEIQSAEQPQPQQPQ-QQQQQQQQQPQQPRQSMEDICRSR 1274

Query: 418  Q 420
            Q
Sbjct: 1275 Q 1275


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
            C37C3.6a protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 238  PVPTLHQAQSSFLPNVDYQQC*LRNKIQLQRQQPNCCYCSWLAQQPEY*HQSDHQRCLPR 417
            P P   Q    +LP  + QQ  +++  Q Q QQP         QQP+   QS    C  R
Sbjct: 1216 PPPPPQQNAQQYLPTPEVQQIEIQSAEQPQPQQPQ-QQQQQQQQQPQQPRQSMEDICRSR 1274

Query: 418  Q 420
            Q
Sbjct: 1275 Q 1275


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 238  PVPTLHQAQSSFLPNVDYQQC*LRNKIQLQRQQPNCCYCSWLAQQPEY*HQSDHQRCLPR 417
            P P   Q    +LP  + QQ  +++  Q Q QQP         QQP+   QS    C  R
Sbjct: 1216 PPPPPQQNAQQYLPTPEVQQIEIQSAEQPQPQQPQ-QQQQQQQQQPQQPRQSMEDICRSR 1274

Query: 418  Q 420
            Q
Sbjct: 1275 Q 1275


>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 212 EINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNT-DI 388
           ++  N +NN   L  R  + + +T  +NN N    S   + N +V   H  +S  +T DI
Sbjct: 381 KLTPNGSNNATGLINRLRQSTKRTPNLNNQNLAVNSQATSKNLSVPRVHDTISLVSTSDI 440

Query: 389 NPTIRDAYLGKS 424
           +   +   LG S
Sbjct: 441 SEIEQLGALGFS 452


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 212 EINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNT-DI 388
           ++  N +NN   L  R  + + +T  +NN N    S   + N +V   H  +S  +T DI
Sbjct: 429 KLTPNGSNNATGLINRLRQSTKRTPNLNNQNLAVNSQATSKNLSVPRVHDTISLVSTSDI 488

Query: 389 NPTIRDAYLGKS 424
           +   +   LG S
Sbjct: 489 SEIEQLGALGFS 500


>U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical
           protein T14G11.3 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 137 IEMPDGDGNLHTVDLEATPDYELL 208
           ++MP   GNL  +D+  T +YE+L
Sbjct: 593 VDMPQQYGNLDAIDVNNTDNYEIL 616


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 212 EINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNT-DI 388
           ++  N +NN   L  R  + + +T  +NN N    S   + N +V   H  +S  +T DI
Sbjct: 381 KLTPNGSNNATGLINRLRQSTKRTPNLNNQNLAVNSQATSKNLSVPRVHDTISLVSTSDI 440

Query: 389 NPTIRDAYLGKS 424
           +   +   LG S
Sbjct: 441 SEIEQLGALGFS 452


>AF016677-8|AAB66140.3|  310|Caenorhabditis elegans Hypothetical
           protein ZK1240.1 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 182 EATPDYELLDEINRNPANNQYLLFTRRNRRSSQTLTINNANS---VTRSNFNANNPTVVI 352
           EA  + +L +    N A+N+ LL        +Q L      S   ++ ++  A N  + +
Sbjct: 203 EALANQKLREIAESNSASNKLLLEELSESLETQKLKNEKLKSFLGMSNADLLALNSEIQL 262

Query: 353 AHGWLSNQNTDINPTIRDAYLGKSDVNVIVLDWRRLALS 469
              W  ++NT++ P   D  L   +VN + +D    ++S
Sbjct: 263 ---WDDSENTEVEPIQFDVALNFPEVNRLAVDVANASMS 298


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 568 GVERSSCYSIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVH 428
           GV  +    +KE     +TA  +  SS      RQ +  PV  +Y+H
Sbjct: 237 GVSHAVVEKVKEETMAGETAHSTHKSSKRVEAERQVREDPVVRDYLH 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,397
Number of Sequences: 27780
Number of extensions: 322657
Number of successful extensions: 1029
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)