Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    30   1.1  
AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    29   2.6  
AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 365 TFIKIYAVYSIV*ILFLINGCLIFI 291
           +FI++Y VYS++ IL+L+N    F+
Sbjct: 177 SFIRMYMVYSVIKILYLVNAIAQFV 201


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 283 VFIDNLTRFILEFFMYLFLLSSAVSPDLILSKSSSLKPVNCDMFYLFLHRYVRVM 119
           + I +   F   FF  LFLL+   S   I+     L P N ++ Y+F+   ++ M
Sbjct: 580 ILISSTIYFFRNFFKVLFLLAGISSWTAIIDALILLVPTNVELNYMFIQLCLKPM 634


>AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical
           protein Y57A10A.14 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 417 EDKQNQVILQNNVEGNDEVQVDTIEAD-KSDMTSSRRSSTAPDIVRGVDFQYTEHELASH 593
           E+  N+++     EGN  +    I+ D +   T SRRS+ + ++ +    +YT H    H
Sbjct: 96  EEDYNEIV--GGAEGNSLLNEHKIQIDLQPSSTGSRRSTESYELCKSCTSRYTRHRTTYH 153


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +3

Query: 384 PTSPSKNAKMEEDK----QNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPDIVR 551
           P    KN+  EE K     N+V  Q  + GNDEV+ +  +  + D+   +++++  D  +
Sbjct: 52  PVKDEKNSNSEEKKTTSSNNEVPPQKKLIGNDEVKKEK-KKSEDDLLDVKKTASKEDDKK 110

Query: 552 GVDFQYTEHELASHK 596
            +D +    +L+  K
Sbjct: 111 RMDKKDPSKKLSKEK 125


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 259 FILEFFMYLFLLSSAVSPDLILSKSSSLKPVNCDMFYLFLHR 134
           F + FF  +F + S VSP      S +  P+NC + + FL++
Sbjct: 288 FFINFFFLIFSIWSLVSPG-----SLTFTPINCLLIFCFLYQ 324


>AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical
           protein Y5H2B.3 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 270 LSMKTKPYEYKTAINQKQXXXXXXXXXXXXKCKLSLKTPTSPSKNAKMEEDKQNQVILQN 449
           L  K K  + K A  Q              K K S K   +PSK AK  ED++NQV ++ 
Sbjct: 98  LIKKEKSEQKKEAKEQVNKEKSEEKKKESVKRKSSEKLE-APSKKAKNSEDQENQVAIKK 156

Query: 450 NV 455
            V
Sbjct: 157 KV 158


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 378 KTPTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSS 530
           K   SP K++K    K       +N E  +EV+   I+ DK+    SR+S+
Sbjct: 445 KKVKSPKKSSKKPAAKVESEEPSDNEEEEEEVEESPIKKDKTPRKYSRKSA 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,032
Number of Sequences: 27780
Number of extensions: 265676
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)