Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a02r
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical p...    74   5e-14
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    32   0.20 
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      32   0.20 
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    30   0.81 
Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threon...    29   1.9  
U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    28   3.3  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    27   5.7  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical
           protein Y57G11C.12b protein.
          Length = 131

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
 Frame = -1

Query: 391 KTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQC-REKLKELFIKNKHV 215
           +TV P+ S++ AEAR  VL+ YK + R  P    D+ +        R  +K+ F KN H+
Sbjct: 17  RTVAPIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHDMPLGVFRAVIKKQFTKNGHL 76

Query: 214 TDIRVIDMLVIKGQMELKESVNIWKQKGHIMAY-FKPTEEPKPKNFLSKFFSGNE 53
           TD+RV+D LV +    +K     +    H+  Y F    E KPK+FLSKF +G E
Sbjct: 77  TDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLFAENVEAKPKDFLSKFLNGKE 131


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 134 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 298
           +LF  +     L+  L+N H+N S ISH F L N+E    +  FL TL F L    I  +
Sbjct: 99  ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 157

Query: 299 IGDLT 313
             + T
Sbjct: 158 FNETT 162


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 134 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 298
           +LF  +     L+  L+N H+N S ISH F L N+E    +  FL TL F L    I  +
Sbjct: 92  ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 150

Query: 299 IGDLT 313
             + T
Sbjct: 151 FNETT 155


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = +2

Query: 86  FWFRFFCWFEVGHNVPLLFPYVHRLF---QLHLTLNNQHINDSNISHMFVLNEEFFQFLS 256
           F F F  WFE    + L++PY + L      H+   N   +D  I           ++  
Sbjct: 67  FSFYFGAWFECWLGLVLVWPYKNGLVLVEDTHMKFTNFETSDRTIM------AHITKYPE 120

Query: 257 TLCF*LGNVIILHYIGDLTI-PCFVKTQNSIPSF 355
           T C   G+ +I HY+       C    + +I SF
Sbjct: 121 TTCLLFGSFLIWHYLASTVAGMCNFVIERAIASF 154


>Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical
           protein F15A2.6b protein.
          Length = 835

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -1

Query: 403 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 227
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 226 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 137
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical
           protein F15A2.6a protein.
          Length = 914

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -1

Query: 403 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 227
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 226 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 137
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threonine
           kinase SAD-1 protein.
          Length = 914

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -1

Query: 403 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 227
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 226 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 137
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical
          protein F18E3.10 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 78 FRNSFLETNDLFIYFVHILKLLNL 7
          FRNSFLE++    Y +HIL  + +
Sbjct: 5  FRNSFLESDRFLAYALHILSAIEI 28


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 109 PTEEPKPKNFLSKFFSGNE*FIYLLCTYLEI 17
           P E PK  NF+S FF  N   +Y   T+++I
Sbjct: 227 PAERPKEFNFVSTFFPENFNKVYDCSTWMDI 257


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 239 FFQFLSTLCF*LGNVIILHYIGDLTIPCFVKTQNSIPSFSMRRR*YWFYGFCTNFYCLPC 418
           FF+ L   CF +   + LH +    I     T++S+  F  +   Y    +C+NF+ L  
Sbjct: 114 FFKILLIQCFVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSLY--VDYCSNFFSLTV 171

Query: 419 RHFRSESIC 445
               S + C
Sbjct: 172 TFLMSLNRC 180


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 120 AIMCPFCFHMFTDSFNSI*PLITSISMTRISVTCLFL 230
           AI  P  FH + DS+ SI  L+ +IS++      ++L
Sbjct: 115 AIYTPIMFHKYRDSYPSIIILMLAISLSMFENLLMYL 151


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
          protein F26D2.4 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 81 SFRNSFLETNDLFIYFVHILKLLNL 7
          ++R+SFLE+++ + Y +H L +  +
Sbjct: 4  TYRHSFLESDEFYAYSLHFLSIFQI 28


>Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 113 EVGHNVPLLFPYVHRLFQ 166
           E GHNV  L P +HR ++
Sbjct: 49  EAGHNVTFLMPIIHREYE 66


>Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 113 EVGHNVPLLFPYVHRLFQ 166
           E GHNV  L P +HR ++
Sbjct: 49  EAGHNVTFLMPIIHREYE 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,163,350
Number of Sequences: 27780
Number of extensions: 229578
Number of successful extensions: 689
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)