Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = +1

Query: 565 KHGMQSLGKVPSA---RXPPANLPSLKTE-IGQD 654
           ++GMQS+GK  +      PPA+LPSL+ E  GQD
Sbjct: 39  RNGMQSVGKAANVVRRMPPPASLPSLRAENNGQD 72


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 390 PSGVPLALTTNCKRYKILTEXPKSSEKNFIHLHAYCNEY 274
           P  + + L  +C +++I+    + S   F   HAYC+EY
Sbjct: 146 PMRLAVCLPDSCNQHEIIDIFNQLSPYPFTACHAYCSEY 184


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 523 ENSQPSSVKSQLXRKHGMQSLGKVPSARXPPANLPSLK 636
           E  +PS V S     HG  S    P    PP ++PS K
Sbjct: 133 EGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSK 170


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 523 ENSQPSSVKSQLXRKHGMQSLGKVPSARXPPANLPSLK 636
           E  +PS V S     HG  S    P    PP ++PS K
Sbjct: 133 EGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSK 170


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 496 NSLYCANTNENSQPSSVKSQLXRKHGMQSLGKVPSA 603
           N  Y  ++  +S+ SSV  +L  KH  Q++ K+P +
Sbjct: 56  NFQYHRDSLHDSESSSVFKKLEAKHSKQTISKIPKS 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,887
Number of Sequences: 27780
Number of extensions: 292058
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)