Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A17
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      30   2.8  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    30   2.8  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.8  

>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 712  PTGXLRYQAFPPGNPLVRSPVPDPAAXFPEYXSRXFSXSGKAVGXFPXXPH 864
            P+G  R Q  PP  P++R P PD       Y  R     G   G FP   H
Sbjct: 1313 PSGN-RKQPLPPPPPMIRGPPPDQM-----YRDRSGGGGGSMRGGFPPASH 1357


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 712  PTGXLRYQAFPPGNPLVRSPVPDPAAXFPEYXSRXFSXSGKAVGXFPXXPH 864
            P+G  R Q  PP  P++R P PD       Y  R     G   G FP   H
Sbjct: 1313 PSGN-RKQPLPPPPPMIRGPPPDQM-----YRDRSGGGGGSMRGGFPPASH 1357


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 32/111 (28%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
 Frame = -3

Query: 925 PQGXGGE---TXXTPGXWXXPNRGXXXGERXPPLSXXGRXGGTGIPEXERQGXEQESARG 755
           PQ  GG        PG +  P +    G   PP S  G   G G P             G
Sbjct: 361 PQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGP-------------G 407

Query: 754 GFQGEXPGILXVLSGFRPPLX*ASXFVMLVQGG-GAYGKTPATRPFYGSWP 605
           G+    PG       + PP      F     GG GAYG  P   P  G+ P
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,322
Number of Sequences: 27780
Number of extensions: 219897
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)