Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A15
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    30   2.4  
AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical ...    29   5.6  

>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 561  APQHLRWLGHIKKLVLATSRKFCHNYECRYSVDMLMTLRRALN 689
            AP  + WL  ++   L T  KF H  EC  SV M   L+ AL+
Sbjct: 1590 APVMVSWLSVVENF-LRTVDKFIHTVECWKSVAMAKVLKLALD 1631


>AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical
           protein Y67A10A.8 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 592 IWPNQRKCCGACYRKWHQFCLGL*KFRSKSHECIASKVMYDSGTDSTHDEF-TNLDNLSS 416
           +WP +    G  ++ WH F LG   +  +S   + ++  Y S TDS H     N   +SS
Sbjct: 258 LWPGKFDVVGCSHQWWHIFILGAMIYWQQSGNQLLTE--YRSFTDSCHRFIPRNFSEISS 315

Query: 415 TIV 407
           + V
Sbjct: 316 SSV 318


>AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical
           protein Y26D4A.3 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 633 NYEC--RYSVDMLMTLRRALNCANLSSGCLTWXSFS 734
           N EC  R  V +    RR  NC N S  C+ W  FS
Sbjct: 58  NQECQQRNQVVISRRARRINNCRNRSISCIEWSCFS 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,086
Number of Sequences: 27780
Number of extensions: 338323
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)