Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B02
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   176   1e-44
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   3.1  
Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical ...    28   5.5  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    28   5.5  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    28   7.2  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    28   7.2  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  176 bits (429), Expect = 1e-44
 Identities = 89/179 (49%), Positives = 116/179 (64%), Gaps = 1/179 (0%)
 Frame = +3

Query: 156 GSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TY 332
           G +   GL VK G  V ++ R AHTD+++PD S YRR  T++    A +T D+R++  T 
Sbjct: 59  GGVFTNGLAVK-GINVTSR-RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTA 116

Query: 333 LIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLF 512
           L                    VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F
Sbjct: 117 LYYGAGGVLSLWAGKEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVF 176

Query: 513 IRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGY 689
           ++HRT  EI+ EKAVPV  LR PQHDD+R Q  +W VVIGVCTHLGCVP+ +AG++GGY
Sbjct: 177 VKHRTKAEIAKEKAVPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGY 235


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 105 KTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAY 260
           +TV    P  S + T+H     QG+ +  G       RFAHT++ Y DFS +
Sbjct: 207 ETVFTWSPHGSYLSTIHK----QGIILWGGKDYARAHRFAHTNVQYIDFSPW 254


>Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 512 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 604
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 512 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 604
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 512 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 604
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 512 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 604
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 540 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVXNAGEFGGY 689
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYY 521


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 540 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVXNAGEFGGY 689
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYY 521


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 614 LGVLGTLIVVLRVTERVDRHSLLGRDFVCCP--VTDKQWF 501
           LG+ GTL ++ R T+  + H  +   F C P  + DK  F
Sbjct: 147 LGLTGTLAILFRTTDSRESHLKVLEKFPCLPKDIIDKPGF 186


>AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical
           protein F40A3.5 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 159 IHAKFPQLKFLARAGRPFSRRVLVRPPEVSGC*LRLG 49
           IH++  +       GR F+R VLV  P++  C ++LG
Sbjct: 224 IHSQLDEFGQELTHGRIFTRNVLVTEPDLRKCEVKLG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,653
Number of Sequences: 27780
Number of extensions: 332542
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)