Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B01
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    29   2.5  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   4.4  
AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    29   4.4  

>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 461 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 580
           N NP GR  GP G  +R+  +    K ++   G TKD  K
Sbjct: 127 NTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAK 166


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 503  AMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPE 619
            AM R +R     R+L +C   ++SLKN   EIL   E E
Sbjct: 980  AMLRYSRANN--RHLKKCNTEEESLKNYEEEILKNYEEE 1016


>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 638 LELDSFGMSRLHYLSKNHAKNLXK 709
           LE++ F    L YL+KNH  NL K
Sbjct: 417 LEIEVFNSESLEYLAKNHQLNLAK 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,160
Number of Sequences: 27780
Number of extensions: 342027
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)