Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U80844-2|AAB37972.1|  134|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U28992-7|AAU45230.1|  240|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 224 INLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVE-DKTEKVRELSQMFK 400
           +NLL R+   S+  I +   C  L N +A HIS   +   E+  E +K  K   +     
Sbjct: 248 LNLLERLRKNSETSIDIPDFCASLQNTVARHISSKLHIFFESLSEQEKLPKQLVIGGGVA 307

Query: 401 PGQYIAVSVVELAPGNTMLT 460
             QYI  ++ +L+  + + T
Sbjct: 308 ANQYIFGAISKLSAAHNVTT 327


>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 320 SESYNKLLEAYVEDKTEK 373
           SE Y+KL+E Y+ D+TE+
Sbjct: 165 SEMYSKLIETYIRDETER 182


>U80844-2|AAB37972.1|  134|Caenorhabditis elegans Hypothetical
           protein C07D8.5 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 370 KSS*IVTNVQTGSVHSCECSGTGTWQHHADDYASTRK 480
           K+S   +++   + HS    G GTWQ +A+D  S  K
Sbjct: 40  KNSDAKSHLTLSNAHSMPAVGLGTWQSNAEDVISAVK 76


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +2

Query: 128 DGYLSDEAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 307
           +G+L  +A  + K H +  N   + S  L     +  R+IH SD  I +  PCK +  + 
Sbjct: 60  EGFLPPDAVGWEKEHSILINQQTMESLGLLARQPV--RIIHSSDSFIGIVWPCKEVALLK 117

Query: 308 ACHISE--SYNKLLEAYVEDKTEKVRELSQMFK 400
              IS   +  +++      + EK++ LS   K
Sbjct: 118 VSIISSRIARERMITLESCGRVEKLKSLSVTVK 150


>U28992-7|AAU45230.1|  240|Caenorhabditis elegans Hypothetical
           protein T05C1.4c protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 323 ESYNKL--LEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRH 496
           ++ NKL  + A  ED T   R      KP +  A + + +  G  MLTTMPQ+     +H
Sbjct: 168 QNRNKLRKMHALNEDGTSPAR------KPAEINATNEILMVNGKEMLTTMPQNSFRSVQH 221


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical protein
            T05C1.4b protein.
          Length = 1163

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 323  ESYNKL--LEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRH 496
            ++ NKL  + A  ED T   R      KP +  A + + +  G  MLTTMPQ+     +H
Sbjct: 1091 QNRNKLRKMHALNEDGTSPAR------KPAEINATNEILMVNGKEMLTTMPQNSFRSVQH 1144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,593
Number of Sequences: 27780
Number of extensions: 247971
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)