Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0015
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...   103   9e-23
AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical ...    80   1e-15

>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score =  103 bits (247), Expect = 9e-23
 Identities = 46/82 (56%), Positives = 57/82 (69%)
 Frame = +3

Query: 3   FHSFKKVMFEMGAPYSRMELASFLTASKGWAAECGLRSGYVELLHLQPSVQKTFNIMRSV 182
           FHSFKKV+ EMG PY++MELASF + SKG+  ECG+R GYVE L+L P V   F  M S 
Sbjct: 295 FHSFKKVLVEMGEPYNKMELASFHSVSKGYMGECGMRGGYVEFLNLDPEVYVLFKKMISA 354

Query: 183 MQCPSVLGQCILDCVMKPPSPG 248
             C +VLGQ ++D V+ PP  G
Sbjct: 355 KLCSTVLGQAVIDAVVNPPKEG 376



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 35/73 (47%), Positives = 50/73 (68%)
 Frame = +2

Query: 299 LKERTATAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKLNMSPDEFYCLRLLE 478
           LKER     K ++SI G  CNP+ G+M+A+P+I IP  A  +A+ LN  PD FY ++LLE
Sbjct: 394 LKERATLVEKAYSSIDGISCNPVQGAMYAFPQITIPQRAVEKAQSLNQQPDFFYAMQLLE 453

Query: 479 ETGVCVIPGTDSG 517
            TG+C++PG+  G
Sbjct: 454 TTGICIVPGSGFG 466



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 499 PXYGFGQLPGSFHFXTTIL 555
           P  GFGQ  G++HF TTIL
Sbjct: 461 PGSGFGQKDGTYHFRTTIL 479


>AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical
           protein C32F10.8b protein.
          Length = 350

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +3

Query: 3   FHSFKKVMFEMGAPYSRMELASFLTASKGWAAECGLRSGYVELLHLQPSVQKT 161
           FHSFKKV+ EMG PY++MELASF + SKG+  ECG+R GYVE L+L P V +T
Sbjct: 295 FHSFKKVLVEMGEPYNKMELASFHSVSKGYMGECGMRGGYVEFLNLDPEVTRT 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,294
Number of Sequences: 27780
Number of extensions: 317690
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)