Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    31   1.1  
AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   5.6  
AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    29   5.6  
Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 532 FISEIELFVQSDQISSNWLSFPKLPCAAVFGKNFAYADWRPRY 404
           F+  I  FV    + +NW     LP  + F K+F Y  W   +
Sbjct: 7   FVGSILFFVSLTGVFTNWTVLLFLPKVSSFNKSFGYITWNQAF 49


>AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical
           protein ZC190.2 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 471 FRSCHVLQSLGRTLHTLTGGRATRRSTGDH 382
           FRS  + +   +TL+T+ G R  R ST DH
Sbjct: 290 FRSKRIKEENTKTLYTIDGRRMNRMSTDDH 319


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 593 FSMGXRQSLSKVFSCCTA*ILHFGNRTFCSVRSDFIELAF 474
           F +G  + L  +     +  L  G +TFCS +S F+E++F
Sbjct: 386 FGIGFERMLQYLIFFRKSLNLQIGKKTFCSKKSIFVEISF 425


>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +2

Query: 242 TLDGTTV*NTTAAPKTWHPSWRI*RRADWSPDKTSP*IHKSLVRRNRWSPVLRRVARPPV 421
           T+ GTTV N++   K W     I   +D+S    S  + K+ +R  + +PVL +V R P+
Sbjct: 261 TIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKA-IRAPKKNPVLPKVHRNPL 319

Query: 422 SVCKVLPK 445
               +L K
Sbjct: 320 KKRTLLYK 327


>Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical
           protein K04G11.3 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 484 NWLSFPKLPCAAVFGKNFAYADW 416
           +W+ F  +P    F +  AYADW
Sbjct: 92  SWIGFSSVPHHLTFNRKVAYADW 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,739
Number of Sequences: 27780
Number of extensions: 420495
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)