Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0004
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    74   1e-13
AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    32   0.58 
U56964-7|AAB54034.1|  382|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U29488-3|AAA68772.1|  221|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 41/100 (41%), Positives = 54/100 (54%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
           + V+T EK VLP+ EDVA EK        IE FDS++L  T  +EK  LP  D I  EK+
Sbjct: 25  KKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQ 84

Query: 184 KNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLE 303
             +  + I NF    LK TET EK   P  T +++   L+
Sbjct: 85  HLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +1

Query: 112 QLKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKR 291
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK   P    + + 
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 292 NQ 297
            Q
Sbjct: 83  KQ 84


>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 22  EKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKFL 198
           EK  L   + +  EK +K   D  +E+    + K  E +EK    +++ +  ++E+NK  
Sbjct: 120 EKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRK 179

Query: 199 NGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEPLLYNSY 324
              E     K +  E  ++ +  +  ++ +R + +  L+  +
Sbjct: 180 KEEEEKKEAKRREDEEKKEAKRKEEEAIEERKRRQSALFAKF 221


>U56964-7|AAB54034.1|  382|Caenorhabditis elegans Hypothetical
           protein F52E4.8 protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 115 LKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQ 270
           +K+  TQE+ P+P K  I  ++  N      EN   T+LK  +T  KTRS Q
Sbjct: 32  IKNYFTQEETPIPSKLQILQKRRLN------ENRPQTELKEQKTEPKTRSRQ 77


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +1

Query: 46  EDVATEKTQKSLFDGIEKFDSSQLKHT---ETQEKNPLPDKDAIXAEKEKNKFLNGIENF 216
           E +  +K   S    +EK  S++ K T    T  K+ +  K +  A  +K   L+    F
Sbjct: 128 EQLKPQKKSDSSNVKVEKEKSTEQKPTIEPSTSSKSAIETKKSSIAPPKKQGTLS---MF 184

Query: 217 DPTKLKHTETCEKTRSPQRTSLSKRNQLEPLL 312
                K TE  EK++SP      K+N+  P++
Sbjct: 185 SKKTEKKTEKTEKSQSPVPQDQEKKNRKRPMI 216


>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = +1

Query: 16  TNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKF 195
           +  K V    ED   EK  ++L   ++K D S  +  E QE++   D+ +I     K+  
Sbjct: 80  SKRKEVTVDKEDNEDEKKDENLEKKLKKDDGSSREKVEDQEQSRKIDR-SIKDRNPKSLE 138

Query: 196 LNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQL 300
               +       K T +  K   P+R+    RN+L
Sbjct: 139 QKSHQKNVGEGSKRTSSSRKPEEPERSRRDDRNRL 173


>Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical
           protein C17E4.6 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +1

Query: 61  EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHT 240
           EKT+K   + ++K+++ +L+    +EKN +  +      +E+ K          +++K T
Sbjct: 224 EKTEKMNIESLKKYEAFELERKRKREKNTV--RVFPPGPREQIKMTESGTTITLSEIK-T 280

Query: 241 ETCEKTRSPQRTSLSKR--NQLEPLLYNSYSQMY 336
             CE+ R     +++ R    L+P+    YS  Y
Sbjct: 281 FKCERPRERNLCAVTGRPARYLDPVTRLPYSTAY 314


>U29488-3|AAA68772.1|  221|Caenorhabditis elegans Hypothetical
           protein C56C10.4 protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -1

Query: 214 SSRCRSGICSFPSPLX*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 59
           S  C  G C  P P     C  AG  P   C S G  +T    R+  +G+ Q
Sbjct: 25  SGTCGLGPCFNPLPALPSPCASAGCGPGFSCGSYGCYRTK--ARVHAAGTHQ 74


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 163 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 47
           R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 73  RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 163 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 47
           R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 73  RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 118 KHTETQEKNPLPDKDAIXAEKEKNKFLNGIE--NFD 219
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,557
Number of Sequences: 27780
Number of extensions: 299340
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)