Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0003
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 29 5.6
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 29 5.6
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 28 7.4
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 28 7.4
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 28 7.4
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 28 7.4
U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical pr... 28 9.7
U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical
protein F39H2.4 protein.
Length = 224
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 52 DNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQ 198
++L+KS LS ++ N N+LKN+LD L K+ + STIS+
Sbjct: 126 NSLIKSMNNLSHDSMNGQFNSLKNNLDELNIEKKQLEVAIADQSSTISE 174
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = +3
Query: 273 DDKTLKELSHAFNXIVQFFAKIFDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQV 452
DDKT L+HAF +QF +I V + TY T KK AE LE V
Sbjct: 78 DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 127
Query: 453 RQLYETLAALLK 488
R E L + K
Sbjct: 128 RLATEKLCTIPK 139
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = +3
Query: 273 DDKTLKELSHAFNXIVQFFAKIFDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQV 452
DDKT L+HAF +QF +I V + TY T KK AE LE V
Sbjct: 87 DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 136
Query: 453 RQLYETLAALLK 488
R E L + K
Sbjct: 137 RLATEKLCTIPK 148
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
KK L+ P S + RLSC + WA+ + +PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
KK L+ P S + RLSC + WA+ + +PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
KK L+ P S + RLSC + WA+ + +PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
KK L+ P S + RLSC + WA+ + +PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303
>U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical
protein ZC317.7 protein.
Length = 574
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
A++ K K+EK ++ T K +KI R++SNF++ +IRL
Sbjct: 278 AQKAKLKAEKLAEKTKTTVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324
>U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical
protein C14C11.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
A++ K K+EK ++ T K +KI R++SNF++ +IRL
Sbjct: 278 AQKAKLKAEKLAEKAKTAVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,129
Number of Sequences: 27780
Number of extensions: 321898
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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