Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   3.3  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   3.3  
Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL110485-28|CAD36500.1|  145|Caenorhabditis elegans Hypothetical...    27   7.7  
AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 501  QVRMRVSVYVCSHAPK---VLRHCCARVICNIVF 409
            +V   V  +VC H P    +L HC A V  NI F
Sbjct: 2117 KVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 501  QVRMRVSVYVCSHAPK---VLRHCCARVICNIVF 409
            +V   V  +VC H P    +L HC A V  NI F
Sbjct: 2117 KVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 501  QVRMRVSVYVCSHAPK---VLRHCCARVICNIVF 409
            +V   V  +VC H P    +L HC A V  NI F
Sbjct: 2117 KVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical
           protein F09F3.11 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +3

Query: 69  N*FKGPFTQTDFERKADFYHIGNRVLSDCSIVSTLLCSTFFPRCTYYFFFYHADSSWSTE 248
           N F   +  T   R +DF   G  ++   ++     C  F P C   F FY A  +W  E
Sbjct: 90  NRFAALYFATRHLRISDFPITGIAIIGAFAVAILYTCLGFRPNCG--FVFYPATFTWDKE 147

Query: 249 PGPGA 263
             P A
Sbjct: 148 YTPCA 152


>AL110485-28|CAD36500.1|  145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 352 THLFFILNFITFCLFHFYTKHNI 420
           T + F   F+ FCLF+F    NI
Sbjct: 102 TQMTFFFGFVIFCLFYFLVYPNI 124


>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 352 THLFFILNFITFCLFHFYTKHNI 420
           T + F   F+ FCLF+F    NI
Sbjct: 472 TQMTFFFGFVIFCLFYFLVYPNI 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,514,043
Number of Sequences: 27780
Number of extensions: 202201
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)