Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0028
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   5.0  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   5.0  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   5.0  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   5.0  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   5.0  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737


>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 SPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 158
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 469  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 356
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 486 LTR*NEHNARTSTRPGTGRIRFPSKPDT 403
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 486 LTR*NEHNARTSTRPGTGRIRFPSKPDT 403
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 486 LTR*NEHNARTSTRPGTGRIRFPSKPDT 403
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 486 LTR*NEHNARTSTRPGTGRIRFPSKPDT 403
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 454 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 299
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 487 YFNIMRPQN--CIYLI*HSRKSSYVSDWIRTR 576
           Y   MRP    C Y I  SR S  VSDW+ +R
Sbjct: 550 YVAAMRPDGYGCFYRIGKSRISVAVSDWVSSR 581


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = -1

Query: 630  ETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVLRPHYIKILTR*NEHNARTS 451
            +T PTR  +++    P N     VR V + S     + ++ RP  I +++  N+ +   S
Sbjct: 1066 KTPPTRDASQE----PNNVQVTNVRKVSQESNAES-VQSIPRPGGIIVMSPTNQTD---S 1117

Query: 450  TRPGTGRIRFPSKPDTPRSSEPILIP 373
              P TG    PS+    +S++PI  P
Sbjct: 1118 APPPTGAAAKPSRFQVTKSADPIATP 1143


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = -1

Query: 630  ETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVLRPHYIKILTR*NEHNARTS 451
            +T PTR  +++    P N     VR V + S     + ++ RP  I +++  N+ +   S
Sbjct: 1066 KTPPTRDASQE----PNNVQVTNVRKVSQESNAES-VQSIPRPGGIIVMSPTNQTD---S 1117

Query: 450  TRPGTGRIRFPSKPDTPRSSEPILIP 373
              P TG    PS+    +S++PI  P
Sbjct: 1118 APPPTGAAAKPSRFQVTKSADPIATP 1143


>U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical
           protein C05E11.6 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 371 SYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYSLT*IFKVRREYPDTAAN 201
           +Y S L   L  I L+   +S W+   +    R +   +SL  IF+VRR Y D   N
Sbjct: 8   AYLSLLVLILVLISLTDAHASSWKSILN-SDKRMETKQHSLESIFRVRRTYIDENEN 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,245
Number of Sequences: 27780
Number of extensions: 426160
Number of successful extensions: 1267
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)