Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0129
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    31   0.82 
AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    29   2.5  
AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    29   2.5  
L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    28   5.8  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    28   5.8  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    28   5.8  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    28   5.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 440  TLRTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 327
            TL+++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 425 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGDL-LRIW 255
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD  +R+ 
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGDAPIRMA 110

Query: 254 Y--EPARH 237
           Y  +P +H
Sbjct: 111 YTGQPTQH 118


>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy
           protein 9 protein.
          Length = 947

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
           +YI++  LR  +Y++  I  R+L P  D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323


>AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical
           protein T22H9.2b protein.
          Length = 719

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
           +YI++  LR  +Y++  I  R+L P  D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
           protein T22H9.2a protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
           +YI++  LR  +Y++  I  R+L P  D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323


>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 142 RYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYHI 261
           ++G++R  +++ G  +  +  L+   + CT++C+ GS H+
Sbjct: 57  KHGADRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHV 96


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 457 LTR*NEHYARTSTRPGTGRIRFPSKPDT 374
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 457 LTR*NEHYARTSTRPGTGRIRFPSKPDT 374
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 457 LTR*NEHYARTSTRPGTGRIRFPSKPDT 374
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 457 LTR*NEHYARTSTRPGTGRIRFPSKPDT 374
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 207 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 79
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 191 IRTPPQMRCSSRSEPYLPSIGFHGT 117
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,551
Number of Sequences: 27780
Number of extensions: 305002
Number of successful extensions: 1004
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)