Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0124
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/96 (20%), Positives = 40/96 (41%)
 Frame = +3

Query: 30   ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
            ++Y DL+      ++   S++    N  R++      + R +       PD  G  + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205

Query: 210  LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
              D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/96 (20%), Positives = 40/96 (41%)
 Frame = +3

Query: 30   ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
            ++Y DL+      ++   S++    N  R++      + R +       PD  G  + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205

Query: 210  LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
              D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = -3

Query: 271 TIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 119
           +++G I + +    ++    K ++  EP+E+   +  D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,705
Number of Sequences: 27780
Number of extensions: 348340
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)