Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0122
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein...    27   7.3  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
           protein Y67D2.7 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -1

Query: 379 DETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLQSESLR-SSIRVSPDFDLT 203
           +E +L+  ID   P    GR+ ++D   S       PT    +ES R   +++ P  ++ 
Sbjct: 150 NEAILRMNIDEISPSDTPGRDSVVDSPFSAENFDKTPTHQGAAESTREQQLKIPPPPEIE 209

Query: 202 RHSSPSFGSQHLCSERAFIH*LETRRLGSAKITN 101
            + + +   +H   ++A    L  +  G+ +  N
Sbjct: 210 VNPAIATRFEHAFRQKALGTDLNQQIQGNQQYNN 243


>Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical
           protein C03C11.2 protein.
          Length = 263

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 300 RLVFRPYTQ--FRRSICSQNRYGPPSGFPLTST*PGIVHHLSGPSICAQSAPSFT 142
           R V++P +   F     SQ R+G     P   T   ++ +LS   + + S+PSFT
Sbjct: 196 RFVYKPSSAQTFSGVEFSQTRFGSSKSRPDLQT-MDVIKYLSSQQVSSSSSPSFT 249


>AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein
           protein.
          Length = 263

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 300 RLVFRPYTQ--FRRSICSQNRYGPPSGFPLTST*PGIVHHLSGPSICAQSAPSFT 142
           R V++P +   F     SQ R+G     P   T   ++ +LS   + + S+PSFT
Sbjct: 196 RFVYKPSSAQTFSGVEFSQTRFGSSKSRPDLQT-MDVIKYLSSQQVSSSSSPSFT 249


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 360 NFKTVSSGKAND*RHWGRNDLNLFSNFKWVRTP--AYSNDE 476
           NF  + S K+N    +   + +LFS+F+W RTP  A SN+E
Sbjct: 38  NFSNLESPKSNSSSLF---EDSLFSSFRWKRTPERAPSNNE 75


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 294 VFRPYTQFRRSICSQNRYGPPSGFPLTST*PG 199
           V++P  Q + SIC     GPP GFP +   PG
Sbjct: 135 VYQPQPQVQSSICIFGPPGPP-GFPGSDGQPG 165


>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 34  KGVTKVKANARRSLREDEIIELRS*FSHSRGVSFPIS 144
           K ++++  + RR   E +  +L S F H  G+ +P+S
Sbjct: 116 KVLSQIDKDVRRLYPEIQFFQLLSRFPHQHGMKYPLS 152


>AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical
           protein F26D11.2 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  VRSGRMKLSSY-VRDFRTPEASRFQSVN 148
           ++S R++ + Y VR F  PE +RF S+N
Sbjct: 327 IKSFRVETADYTVRAFADPEKTRFSSIN 354


>AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical
           protein K06H6.1 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 292 LSPLYPVPTIDLQSESLRSSIRVSPDFDLTRHSSPSFGSQHLCSER 155
           + P YPVPT+ + +E   S I  S   +++    P+F  Q +  +R
Sbjct: 70  IRPTYPVPTVKMVAEPTCSEI-FSGWREVSEQPQPTFPPQEIPEDR 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,700,758
Number of Sequences: 27780
Number of extensions: 224510
Number of successful extensions: 472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)