Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0117
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    31   1.1  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   4.5  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   4.5  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   4.5  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   4.5  
L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -1

Query: 424 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGDL-LRIW 254
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD  +R+ 
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGDAPIRMA 110

Query: 253 Y--EPARH 236
           Y  +P +H
Sbjct: 111 YTGQPTQH 118


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 439  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 326
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 LTR*NEHNARTSTRPGTGRIRFPSKPDT 373
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 LTR*NEHNARTSTRPGTGRIRFPSKPDT 373
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 LTR*NEHNARTSTRPGTGRIRFPSKPDT 373
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 LTR*NEHNARTSTRPGTGRIRFPSKPDT 373
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +3

Query: 141 RYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYHI 260
           ++G++R  +++ G  +  +  L+   + CT++C+ GS H+
Sbjct: 57  KHGADRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHV 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,360
Number of Sequences: 27780
Number of extensions: 377396
Number of successful extensions: 1185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)