Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0012
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   5.0  

>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 253  RIIFKLKFYNNFIKKEIYIIYIVNKFYFIINYFSNR 360
            R +  +++YN +  KE+Y+ YI  K Y +   + N+
Sbjct: 1210 RTVQLMRYYNQYSHKELYVKYIY-KLYDLHTSYGNK 1244


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 253  RIIFKLKFYNNFIKKEIYIIYIVNKFYFIINYFSNR 360
            R +  +++YN +  KE+Y+ YI  K Y +   + N+
Sbjct: 1210 RTVQLMRYYNQYSHKELYVKYIY-KLYDLHTSYGNK 1244


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 253  RIIFKLKFYNNFIKKEIYIIYIVNKFYFIINYFSNR 360
            R +  +++YN +  KE+Y+ YI  K Y +   + N+
Sbjct: 1210 RTVQLMRYYNQYSHKELYVKYIY-KLYDLHTSYGNK 1244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,175,316
Number of Sequences: 27780
Number of extensions: 44225
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)