Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20034
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    71   4e-13
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    30   0.86 
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   3.5  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +2

Query: 257 LLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXVGDL 436
           L  +I +LN    + GII+Q+P    H  DA  V D + P KDVDGL  IN GR+  G+L
Sbjct: 80  LKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPLKDVDGLTRINAGRLARGEL 139

Query: 437 SGXI-PCTPAGCVELI 481
              I PCTP GC+ L+
Sbjct: 140 QRTIFPCTPFGCLYLV 155



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/76 (44%), Positives = 50/76 (65%)
 Frame = +3

Query: 24  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEK 203
           +A+I+SG+E +  + +D+ Q++ + R     F   LAIVQVG R DSNVYI  KLK A++
Sbjct: 2   VAEIVSGLEYSKKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKE 61

Query: 204 IGIAAEHIRLPRDITE 251
           IG   + I+LP  IT+
Sbjct: 62  IGADGKLIKLPDTITQ 77


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 128 PGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCH 24
           P     PF +QP+H+     F++S N N  ++LC+
Sbjct: 57  PNFRRVPFSSQPQHVSNAQSFHQSPNSNDSFSLCY 91


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 21  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLA 134
           K+ +I  G E   SI+N  R+++ R+RS  + F  +L+
Sbjct: 288 KITEIKKGSESYSSIQNQAREEILRIRSIVNEFRGKLS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,017
Number of Sequences: 27780
Number of extensions: 169293
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)