Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20022
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.24 
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   5.2  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   5.2  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   5.2  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    28   5.2  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 48  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 203
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 496 CCSPTR**TSN*RVQYACLHHRRRQFSHSRDWLWNRASERGCS 368
           C +P R    + R  +    HRR+++   R W+  RA + G S
Sbjct: 147 CSAPQRKAARHLRWDWTLARHRRKRYQKYRRWMAGRAKKMGLS 189


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +1

Query: 310 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 465
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG       + K++    
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376

Query: 466 WKFITLWENN 495
           W F  +   N
Sbjct: 377 WPFFNVSTGN 386


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 106 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 216
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 106 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 216
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 106 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 216
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 423 CLRRWCRQAY*TRQ-LEVHYLVGEQQSVLQIHNTKYNQYLKMSTTTCNCNSREPCC 587
           C+  WCR     +Q  +   +   QQ   Q    +  Q    +T   NC + +PCC
Sbjct: 432 CVAGWCRGGQQFQQPAQTTAVATVQQPQQQPQQQQPQQQRPATTPQSNCYNEDPCC 487


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 496 CCSPTR**TSN*RVQYACLHHRRRQFSHSRDWLWNRASERG 374
           C +P R    + R  +    HRR+++   R W+  RA + G
Sbjct: 31  CSAPQRKAARHLRWDWTLTRHRRKRYQKYRRWMEGRAKKMG 71


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 274 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 360
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,891
Number of Sequences: 27780
Number of extensions: 302740
Number of successful extensions: 1114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)