Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30035
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    33   0.17 
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    31   0.51 
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    31   0.51 
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    31   0.51 
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 344 DFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           D +SR+   IRI F   GY+S A IE +L ++S +   A  +R
Sbjct: 244 DNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVLRQAQDER 286


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 344 DFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           D +SR+   IR+ F S G +S A IE +L ++S +   A  +R
Sbjct: 248 DNSSRFGKFIRVHFDSTGCISGANIEFYLLEKSRVLKQAPNER 290


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 344 DFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           D +SR+   IR+ F S G +S A IE +L ++S +   A  +R
Sbjct: 248 DNSSRFGKFIRVHFDSTGCISGANIEFYLLEKSRVLKQAPNER 290


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
           heavy chain II protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 344 DFTSRYRPHIRIQFSSLGYLSYARIEAFLAQRSSLTSXANLKR 472
           D +SR+   IR+ F S G +S A IE +L ++S +   A  +R
Sbjct: 248 DNSSRFGKFIRVHFDSTGCISGANIEFYLLEKSRVLKQAPNER 290


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 476 RKSSATTWFDDLSNVEVMCDVTMSMASAVSRGDG 577
           +KS    WFD   +V+++ + T+  A  V+RG+G
Sbjct: 56  KKSINEIWFDMTEDVDIVHNRTIREAYTVTRGEG 89


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 361 ITRRKISHR*SPRWQMV*FLRRTRTLPTVLVPLSLNSQIGYDHGIDKLFRTTVIMPPLVG 182
           I  +K  HR   +  +V F+R   T PT    L    ++  D   D+L    V    +VG
Sbjct: 173 IMTKKCGHRFCDQCILVAFMRSGNTCPTCRQNLGSKRELQQDPRFDQLIYQVVESRSIVG 232

Query: 181 R 179
           R
Sbjct: 233 R 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,895
Number of Sequences: 27780
Number of extensions: 246706
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)