Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30002
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical ...    29   4.6  
U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas...    28   6.1  
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas...    28   6.1  
U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    28   6.1  
AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division...    28   8.1  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 545 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 670
           C  HL   QVR   + H+R   +P  V    +   TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEV----IRFATGQRNEH 537


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 545 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 670
           C  HL   QVR   + H+R   +P  +    +   TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEM----IRFATGQRNEH 537


>AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical
           protein H10D18.6 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 LEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTY 200
           +E VG    + H+T    KM S+ +YN D Y Y
Sbjct: 301 VEFVGKYGPLHHMTPYSLKMSSFQRYNYDIYVY 333


>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoforma protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 182 HGQVHLRADFLGHVHYLSPRSCLLDDH-ETSLQHLHRFQEHAPEIYSR 322
           HG V L    +G+   L+ + CL+DD  +  + +       +PE+Y +
Sbjct: 668 HGLVFLHGSMVGYHGMLTSKCCLIDDRWQVKISNYGLQDLRSPEMYEK 715


>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoformb protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 182 HGQVHLRADFLGHVHYLSPRSCLLDDH-ETSLQHLHRFQEHAPEIYSR 322
           HG V L    +G+   L+ + CL+DD  +  + +       +PE+Y +
Sbjct: 668 HGLVFLHGSMVGYHGMLTSKCCLIDDRWQVKISNYGLQDLRSPEMYEK 715


>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = +2

Query: 563 GSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEHHRP*LHGYARIYPRVPFDSSCNGK 742
           G   R  G      R +P     G+ Y  +G R+E +R  LHG  R  P  P      G 
Sbjct: 529 GDGERKEGFIQPAHRPSPSFRGRGRGYGDSGFRRESYRGGLHGSDRYGPYPPRGGGFRGG 588

Query: 743 R 745
           R
Sbjct: 589 R 589


>AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division
           cycle related protein25.1 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 341 SGEAELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHVQG 210
           +GE  ++      +++EN  DVAN  ++ P+    E GS    G
Sbjct: 4   TGEKAIYEDQNNVNIIENVVDVANGINESPKTLFEEDGSSRDSG 47


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
            protein K02F6.4 protein.
          Length = 1193

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = -1

Query: 353  LHFD-SGEAELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHVQGSRHVGVLVHVV 177
            L FD  G+ E+F  IFRE VL     +     D  +   A+     V+G        + V
Sbjct: 1002 LSFDVRGDKEMFPYIFRETVLMKNSWMTACLKD--KKNFADDYKFQVEGVEMKSETFNTV 1059

Query: 176  LAIAQHF-LHQVGQVDNFSIVANNF*ATEDQTGEVFNVLRLLQA 48
              I QH   +Q+  +   ++  + F  T D T E  N++R L A
Sbjct: 1060 RLIHQHAQQYQIPYLAGVTMYYHQFPETPDTTFE--NLVRDLGA 1101


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 344 DSGEAELFASIFREHVLENGEDVANSFH 261
           DS ++E+FA IF  H  ++     NS H
Sbjct: 720 DSEKSEIFAKIFASHYSDDSSQSQNSLH 747


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,194,177
Number of Sequences: 27780
Number of extensions: 367850
Number of successful extensions: 1284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)