Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0033
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    41   7e-04
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    35   0.048
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.19 
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   1.4  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    29   2.4  
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    29   4.1  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    29   4.1  
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 314 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 493
           CCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L   + +Y   + 
Sbjct: 71  CCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRG 130

Query: 494 VQ 499
           V+
Sbjct: 131 VE 132



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 105 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 194
           +EGG++ VKYL+F  NL+  + GL ++IVG
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 412 LHEAYGLGRFGYAQPERFHYSISGRQERPEDYYIIQTDLQCCGINSPADWADHGLPIPST 591
           LH+++ LG     Q     Y  S   E   D        +CCG+ + +DW      IP +
Sbjct: 106 LHDSFRLGIGNQLQTGMVRYHESRGVESAWDK--THQLFECCGVTNSSDWLTF-TTIPDS 162

Query: 592 CC 597
           CC
Sbjct: 163 CC 164


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +2

Query: 314 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 493
           C G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  +  Y  D +
Sbjct: 103 CVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRDDPD 162

Query: 494 VQKTIISYKQT 526
           +Q  I S ++T
Sbjct: 163 LQLLIDSMQET 173



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 123 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 230
           CVKY +F FN++F + G  +L+ G+ A+I    ++N
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 577 PIPSTCCSAQEINDGVVAACTENSTNFHSK 666
           P+P+T CSA  I++  V +C   ST  H+K
Sbjct: 96  PLPATFCSAASIDNNAVKSCKNKSTTLHAK 125


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 96  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 230
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 514 IQTDLQCCGINSPADWA-----DHGLPIPSTCCSAQEIN 615
           +Q +LQCCG+++  DW       + L  P +CC  Q  +
Sbjct: 140 LQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFD 178


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 314 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 469
           C GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  +I
Sbjct: 75  CIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTI 126


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 317 CGAVKENHCMIITFSVFLLIIFVAELAVG 403
           CGAV  +  +++ F +FL+  F+A++A+G
Sbjct: 46  CGAVNRSRFLLLAFVMFLIGTFLADVAMG 74


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 116  STFEGHCYSIKYYRQIVLLRNKMIHTSANKAH 21
            +TF   C S K   ++  + NKM+H +A+ AH
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNADIAH 1972


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 320 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 445
           GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V
Sbjct: 91  GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 119 HSTFEGHCYSIKYYRQIVLLRNKMIHTSANKA 24
           H T   H Y +  YR I+ LR K+  TS NKA
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENKA 173


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 326 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 502
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 503 T 505
           +
Sbjct: 59  S 59


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 326 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 502
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 503 T 505
           +
Sbjct: 59  S 59


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 415 HEAYGLGRFGYAQPERFHYSISGRQERPEDYYIIQTD 525
           H+A GL R  Y   E  +  I    E  EDY I QTD
Sbjct: 321 HDADGLNRGRYQVMEHVNMGIMRNSEDFEDYDITQTD 357


>U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical
           protein T27B1.2 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 161 KQEIEAKHEVLYTGHSTFEGHCYSIKYYRQIVLLRNKMIHTSA 33
           K E+E +H+  +TG   FE    + ++ R+  L  +K IH+ A
Sbjct: 96  KMELE-EHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDA 137


>Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical
           protein F30A10.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -3

Query: 214 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 65
           +F   L P +  + P++   +  QN+R    +IP   AI I   QL +   LY
Sbjct: 54  KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
 Frame = +1

Query: 514 IQTDLQCCGINSPADW-----ADHGLP-----------IPSTCCSAQEINDGVVAACTEN 645
           +Q D +CCG N+  DW      DH LP           IP +CC +     G   A +++
Sbjct: 153 LQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQRVQYIPDSCCKSTHQRKG--CALSDS 210

Query: 646 STNFHSKG 669
             N   +G
Sbjct: 211 PNNIFYRG 218


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 338 HCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 481
           H + +  S  LLII  A    G+   + H   +D V+RN+N  I Q P
Sbjct: 568 HAIRLIRSGGLLIINQALNGGGVMSSIDHMTNDDRVIRNMNIRIKQDP 615


>AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical
           protein Y62H9A.12 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 460 RFHYSISGRQERPEDYYIIQTDLQ 531
           +F +  SG  E+PEDY  I T ++
Sbjct: 134 KFTFKTSGAPEKPEDYLFIDTPIR 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,248
Number of Sequences: 27780
Number of extensions: 322340
Number of successful extensions: 1006
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)