Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0023
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   128   6e-30
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.3  
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    28   8.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  128 bits (308), Expect = 6e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ Q
Sbjct: 7   HLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQ 66

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRLMNCF 276
           R+++VDGKVRT   +P GFMDVV++ R    F
Sbjct: 67  RVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  117 bits (281), Expect = 1e-26
 Identities = 53/86 (61%), Positives = 64/86 (74%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           E+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP
Sbjct: 92  ERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
            +KVND+I  +I+T KI D +KFE G
Sbjct: 152 HVKVNDTIVFNISTQKITDSVKFEPG 177



 Score =   99 bits (238), Expect = 2e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGK  +  +S
Sbjct: 177 GNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVS 236

Query: 689 LPRGKGXXXXXXXXERDKRI 748
           LP G G        ERDKR+
Sbjct: 237 LPTGAG-IRLSIAEERDKRM 255


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 297 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 428
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 526 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH 627
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 25.0 bits (52), Expect(2) = 5.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 556 HHRVPRETSRLLRHCAHQGLHGTH 627
           HH  P        H  H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +1

Query: 601 AHQGLHGTHLRHEVEQRVHNRQGT 672
           AH G HG H         H   GT
Sbjct: 501 AHHGHHGEHHHAPAHHGHHGEHGT 524


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 454  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 290
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imitation
            swi) homologprotein 1 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
 Frame = +3

Query: 321  TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT---IRYPDPLIKVNDSIQLDIATTKIMD 491
            T EE ++ +C+  R+    +NV   +    R     R+ D  +K   +++L      ++ 
Sbjct: 904  TEEEDRFLVCETHRLGHDKENVFEELRQSVRMAPQFRF-DWFLKSRTAMELQRRCNTLIT 962

Query: 492  FIKFESGTCV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPRDTP 629
             I+ E G  V S+  +   A      A+D+   S   T++  + TP
Sbjct: 963  LIEREMGEVVESKPVIVTAADKKKSVAKDLSKSSGTPTAKKVKATP 1008


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,477,226
Number of Sequences: 27780
Number of extensions: 414513
Number of successful extensions: 1267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)